similar to: Looking for nice implementations of rectangular scatterplot matrices

Hi all, Has any of you implemented code for non-negative matrix factorization to solve Y=T P' +E; dim(Y)=n,p ; dim(T)=n,nc; dim (P)=(p,nc); dim(E)=n,p where T and P must be non-negative and E either Gaussian or Poisson noise. I'm looking for two variants: 1. Easy (I think), T is known (that is we just want to solve the general inverse problem) 2. Harder (?), T is unknown (under some

After having browsed the documentation for a while without discovering what I am looking for, maybe one of you would know ... What I want to do: I have two fortran files MC.f and ESCA.f. In MC.f there is a call to a routine called lpost. This routine (lpost) is defined (among other things) in ESCA.f. Under linux, I can do the following: R CMD SHLIB MC.f and R CMD SHLIB ESCA.f followed by

Has anyone seen an official announcement to DSC-2005. I saw and email exchange on the R-news list in mid January in which a date was announced unofficially. (to DSC-organizers: we need and "official" announcement to request funding and travel permission and flights from Europe to Seattle are starting to fill up, so this is urgent). Christian Ritter Functional Specialist Statistics Shell

This might be easy (but I didn't find an answer in the archives). I'm trying to make nice looking images (using image()). To make them look nice (not jagged), it usually takes me at least 100x100 points. This can be slow for frequent redraws. Is there a smarter (less point intensive) way? I was thinking in terms of hexabins, for example, which for much less jagged looking regions,

For some time now I use a modified version of names (extract direction) of the following type: Names<- function (x,filter="^") { grep(filter,names(x),value=TRUE) } Request: Has anyone already written a version which goes the other way (that is, which allows assignment of the type Names(x,filter)<-...). Naive versions are obvious, but I think something would have to be done

There is a little problem in handling logicals in RMySQL: # here is the MySQL connection > con <MySQLConnection:(1816,0)> # here is the data frame > print(a<-data.frame(x=c(TRUE,FALSE),y=c(FALSE,TRUE))) x y 1 TRUE FALSE 2 FALSE TRUE # as promised, the two data frame columns are identified as logicals and # the field types are set to tinyint > field.types <-

Maybe someone out there has done this already .... (which would save me some time): For a repetitive chemometric task I need to retrieve spectra from a Nicolet IR acquisition system into R and analyze them there. The raw spectra are in files ending in the extension .spa. I can use the Omnic software to export them to .csv, but I would like to skip this step since it is manual. Has anyone of you

Hi to all who suffer from rterm not shutting down in xemacs/ESS on windows NT or 2000. Also hi to those who could eventually help. Here is some more information which could help and some ENCOURAGEMENT to contribute to a solution. 1. It may be an xemacs problem but it is more likely an interaction between rterm/comint/and xemacs. In fact, the problem started occurring around version R 1.6.0. I

Hi all, I''m still not quite happy with the NA and factor handling of lm and predict.lm in R1.6.1 (forcing me to use my not very skillfully crafted patches). Here is the problem 1: >

R-2.1.1 on windows XP I just noticed something unpleasant when using bwplot (from lattice). In order to satisfy a wish from a client, I needed to produce sets of boxplots conditioned by another factor. My client didn't like the look of the boxplots (by default, they have a star to mark the median, instead of the commonly used line). I told him "no problem" dumped panel.bwplot,

This message is for people who know the mechanics of model.frame within lm. I am fitting lm models for different responses on a data frame which has (at least some) factors. As it happens, some of the responses are NA for some of the factor levels. Logically, lm creates an xlevels list for which the length of levels is different from the original number of levels in the data frame (a

Here is the first one. It concerns the handling of multiple offsets. The following lines creates a list with 3 explanatory variables and one response. > x<-seq(0,1,length=10);y<-sin(x);z<-cos(x); w<-x+y+z+rnorm(x) > data<-list(x=x,y=y,z=z,w=w) A lm is fitted with one explanatory variable and two offsets. So far, so good. >

This problem is not limited to R, but R is one of the packages in which it arises. princomp is a nice function which creates an object for which inspection methods have been written. Unfortunately, princomp does not admit cases in which the x matrix is wider than high (i. e. more variables than observations). Such cases are typical in spectroscopy and related disciplines. It would be nice if the

(R 1.9.1; Windows 2000;) I'm just comparing ease of use, speed, etc for methods of transferring data frames in the Excel, MySQL, R triangle. It turns out that going from Excel to R (when doing this carefully). Using the clipboard is actually quite fast and efficient (2 seconds for transferring 120 000 cells on a common desktop computer as compared to much longer for going the RODBC route,

Dear R- experts, I am trying to superimpose two or more scatterplot matrices generated by pairs() to visualize the differences over each datasets, but have not been very successful. Two data frames, df1 and df2 for example, each has the same five variables in columns. My goal is to paint each dataset with a color on the same plot panel for each pair of the five variables. That is, in this

Dear All, I would like to plot a scalar (e.g. a temperature) on a non-rectangular domain (or even better: I would simply like to be able to draw a contour plot on an arbitrary 2D domain). I wonder if there is any tool to achieve that with R. I did some online search in particular on the list archives, found several queries similar to this one but was not able to find any conclusive answer. I

Hello, I am new to R and would like to know how to label data points in the matrices of scatterplots made by the pairs() command. To be more specific, I want to assign a number to each data point, instead of the small circumference that appears as a data point. If anyone here knows if its possible to do this with R, I would greatly appreciate your help. Thank you, Mauricio Esguerra PhD

Dear R community In a current paper, I'm (briefly) considering the topic of producing scatterplots or maps with point labels positioned in such a way as to minimize label overlap and occlusion. This is a topic with a large, but scattered literature. In CS, it is considered NP-hard, but there are a variety of approximate solutions. The most complete bibliography I've found is the

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 I have a rectangular matrix of size 920 by 85. I'd like to coerce it into a square matrix such that all row/col names are present in the new matrix and the additional values are zero. As an example: A B C D A 1 2 3 4 E 5 6 7 8 F 9 10 11 12 Would be coerced to: A B C D E F A 1 2 3 4 5 9 B 2 0 0 0 6 10 C 3 0 0

Dear R-Listers, I have spatial data on an equidistant rectangular grid, similar to topographic data. I know that there are quite a few R-packages or base functions that provide nice iso-contours plot, but I don't want a plot, just the smoothed isocontour line of ONE level (e.g. 10 mm). Data sets are large, so it would be preferable if the availability of regular grid data could be exploited,