similar to: Failing to install on Linux FC4

Hi everyone, Firstly, I'm sorry for the cross-post. I re-read the posting guide and it appears my question is more related to r-devel.... (i think :-) ) I downloaded the source code available at: http://cran.fhcrc.org/src/base/R-2/R-2.4.0.tar.gz to a linux machine (Linux 2.6.11-1.1369_FC4smp #1 SMP). I successfully configured and compiled it, which means I'm able to run it from the

Hi everyone, say I have a function called 'foo', which takes the argument arg1. Is there any mechanism that I can use to "learn" about the variable where foo(arg1) is going to be stored? For example: x <- foo(arg1) so, inside foo() I'd like to be able to get the string "x". if, foo(arg1) was used insted, I'd like to get NA. thank you very much, b

I think that you misunderstood me. As far as I know, RMA does three things: background correction, quantile normalization, and summary from probes to probesets. I want the probe values after background correction and quantile normalization but before the summary. On Sat, Dec 26, 2009 at 12:07 PM, Benilton Carvalho <bcarvalh at jhsph.edu> wrote: > pm(data) > > b > > On Dec

Hi Everyone, when building (say) R-2.4.0 from the source, is it still the recommendation to use GCC 3.4? Thank you very much, Benilton Carvalho PhD Candidate Department of Biostatistics Johns Hopkins University

Hi Everyone, After searching the subject and not being successful, I was wondering if any you could explain me the idea behind the following fact: all(NULL == 2) ## TRUE any(NULL == 2) ## FALSE Thanks a lot, Benilton -- Benilton Carvalho PhD Candidate Department of Biostatistics Johns Hopkins University

Hi Everyone, Given the scenario I have, I was wondering if anyone would be able to give me a hind on how to get the results from hubers() in a more efficient way. I have an outcome on an array [N x S x D]. I also have a factor (levels 1,2,3) stored on a matrix N x S. My objective is to get "mu" and "sigma" for each of the N rows (outcome) stratified by the factor

Hi everyone, sorry if this was discussed before (and in this situation, could you please point me to the discussion in the archive? My search didn't seem to be effective). Is there a way of getting the names of objects in a .rda file without having to load it? Thank you very much, benilton -- PhD Candidate Department of Biostatistics Bloomberg School of Public Health Johns Hopkins

Hi Everyone, I often use the 'safe prediction' feature available through glm(). Now, I'm at a situation where I must use biglm:::bigglm. ## begin example library(splines) library(biglm) ff <- log(Volume)~ns(log(Girth), df=5) fit.glm <- glm(ff, data=trees) fit.biglm <- bigglm(ff, data=trees) predict(fit.glm, newdata=data.frame(Girth=2:5)) ## -1.3161465 -0.2975659

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

Hi everyone, I have 2 environments (2 different R sessions) as described below: Session 1: Name of the environment: "CrlmmInfo" Objects in the environment: index1: logical index - length 238304 index2: logical index - length 238304 priors: list of 4 - (matrix 6x6, 2 vectors of length 6, vector of length 2) - all num params: list of 4: centers [238304 x 3 x

Hi everybody, I've been looking for information on "how to create administrative shares", but I didn't find... Can you help me on this matter? Regards, -- Benilton Carvalho DE / IMECC / UNICAMP Red Hat Linux i18n Team

After a fresh install, I noticed that shorewall 2.4.0 wasn''t starting automatically under FC4. The startup script installs properly from the rpm: /etc/rc.d/init.d/shorewall ... but the post install "/sbin/chkconfig --add shorewall" produces this in the runlevel symlink directories: /etc/rc.d/rc5.d/S-1shorewall /etc/rc.d/rc0.d/K-1shorewall /etc/rc.d/rc6.d/K-1shorewall

I'm trying to build from the latest SVN sources on Mac OS X 10.4.3 and I seem to be having a problem making the documentation. When I do make install, i get the following: (sly at gigondas):~/src/R/r-devel/build-f95$ make install make[1]: Nothing to be done for `front-matter'. SVN-REVISION is unchanged make[1]: Nothing to be done for `install'. make[1]: Nothing to be done for

Hi all, working on the problem that I cannot log in from my NT4 box I noticed that: - Test 8 from DIAGNOSIS.TXT fails: from the NT machine I try: "net view \\server" and I have: "System error 5 has occurred. Access denied" I don't know how to handle this... Could you please help me? Regards, -- Benilton Carvalho DE / IMECC / UNICAMP Red Hat Linux i18n Team

When using nat and the new 2.4.0 providers functionality, the following error is produced on boot with FC4: Cannot open "/proc/sys/net/ipv4/route/flush The box is running the latest update: selinux-policy-targeted-1.23.18-17 >From /var/log/audit/audit.log: type=PATH msg=audit(1120675555.415:78677): item=0 name="/sbin/ip" type=AVC_PATH msg=audit(1120675555.415:78677):

Hello, When doing "make install" under any port, I get *** Error code 1 after the "Checking if *** already installed" (see below for help2man as an example). This error seems to occur with any port, such as apg (/usr/ports/security/apg). The tarball are fetched from Internet. I think this is due to the difference of version : CVS has RELENG_4_6_2 and 'make

I am attempting to deploy a TE210P with one port configured (all 24 channels) as Cisco HDLC, currently running 2.6.11 FC4 with HDLC module compiled. HDLC (RAW) appears to work fine, however, using Cisco HDLC (via sethdlc & sethdlc-new) results in no traffic being encapsulated or transmitted via the hdlc0 interface. Is there anybody here currently running a similar configuration on a

On 06/02/2011 06:47 AM, Benilton Carvalho wrote: > 'R CMD check' should be applied on the .tar.gz, not on the source directory. Why? The help says: "Check R packages from package sources, which can be directories or package 'tar' archives with extension '.tar.gz', '.tar.bz2' or '.tgz'." I just skimmed through the relevant section (1.3.1) in

Preamble: I am in no way opposed to Perl in general - I love Perl and probably always will. R currently has Perl as both a build-time and run-time dependency. This adds about 200 Mb, give or take, to the required environment size (as measured in CentOS - looks like it might be a bit smaller in Ubuntu?). Not such a huge deal, really, but the actual benefit R gets from the dependency is quite

Kanru, Thanks for the bugreport. On 11 April 2006 at 22:03, Kanru Chen wrote: | Package: r-base-core | Version: 2.2.1.svn37668-1 | Severity: minor | | In manpage of /usr/bin/R, the first, fourth and last line shows `VERSION' | instead of `R'. | | I believe it is a typo. More likely something is wrong with how R.1 is autogenerated using help2man. Incidentally, that `R --version'