similar to: Help with singular value decomposition

Dear R-users, I couldn't find a function or some help in R-project web about the Generalized Singular Value Decomposition. In MatLab there is a simple function for this algebric issue (gsvd). Is there anything like that in R? And, if not, could you help me to apply this method in R? Thanks in advance, Giancarlo +++++ This mail has been sent through the MPI for Demographic Rese...{{dropped}}

Hello, I would like to perform a generalized singular value decomposition with R. The only possibility I found is "GSVD" that is based on LAPACK/BLAS. Are there other possibilities too? If not, has anybody used LAPACK/BLAS under Windows XP? How can I install them? Following [1] did not help. I hope this is the right place for my question. Thank you very much! Oana Tomescu [1]

Hello, Like QR decomposition, I am looking for decomposition to get U and V matrix of SVD decomposition (according to LINPACK, X = UDV'). Do you know if there is a function which could calculate this decomposition? Look forward to your reply, Haleh

Hey, All In principal component analysis (PCA), we want to know how many percentage the first principal component explain the total variances among the data. Assume the data matrix X is zero-meaned, and I used the following procedures: C = covriance(X) %% calculate the covariance matrix; [EVector,EValues]=eig(C) %% L = diag(EValues) %%L is a column vector with eigenvalues as the elements percent

In summary.manova the qr decomposition of a NxN matrix is calculated and for some cases is giving me a rank < N. However, following suggestions of professor Ripley to calculate the rank of a Matrix On 7 Jun 2002, Brian Ripley wrote: > For a more reliable answer, look at the SVD > (function svd) and look at the > singular values. For example (from lda.default) X.s <-

Hi: I create a hermitian matrix and then perform its singular value decomposition. But when I put it back, I don't get the original hermitian matrix. I am having the same problem with spectral value decomposition as well. I am using R 1.7.0 on Windows. Here is my code: X <- matrix(rnorm(16)+1i*rnorm(16),4) X <- X + t(X) X[upper.tri(X)] <- Conj(X[upper.tri(X)]) Y <-

Hi everyone: I try to use r to do the Cholesky Decomposition,which is A=LDL',so far I only found how to decomposite A in to LL' by using chol(A),the function Cholesky(A) doesnt work,any one know other command to decomposte A in to LDL' My r code is: library(Matrix) A=matrix(c(1,1,1,1,5,5,1,5,14),nrow=3) > chol(A) [,1] [,2] [,3] [1,] 1 1 1 [2,] 0 2 2

Dear fellow R Users: I am doing a Cholesky decomposition on a correlation matrix and get error message the matrix is not semi-definite. Does anyone know: 1- a work around to this issue? 2- Is there any approach to try and figure out what vector might be co-linear with another in thr Matrix? 3- any way to perturb the data to work around this? Thanks for any suggestions.

Hi list, Does anyone know if there is a library in R that does MTM-SVD method for spectral analysis? Thanks ----- Yasir H. Kaheil Columbia University -- View this message in context: http://www.nabble.com/Spectral-analysis-with-mtm-svd-Multi-Taper-Method-Combined-with-Singular-Value-Decomposition-tp21671934p21671934.html Sent from the R help mailing list archive at Nabble.com.

Can somebody help me with the following issue (SEM in R), please:   When I run the model (includes second order models) in R, it gives me the following:   1)       In sem.default(ram = ram, S = S, N = N, param.names = pars, var.names = vars,  :   Could not compute QR decomposition of Hessian. Optimization probably did not converge.   2)       I have aliased parameters and NaNS   or sometimes when

Hello! I suppose this is more a matrix theory question than a question on R, but I will give it a try... I am using La.svd to compute the singular value decomposition (SVD) of a variance matrix, i.e., a symmetric nonnegative definite square matrix. Let S be my variance matrix, and S = U D V' be its SVD. In my numerical experiments I always got U = V. Is this necessarily the case? Or I might

Hi All, I'm trying to run generalized singular value decomposition (GSVD) function from LAPACK library. Basically my problem is that I can not run it for large matrices, I get a memory error. I'm using R 2.5.1. I tried this on intel centos5 machines with 2 GB memory and 8 GB memory. I have unlimited max memory,cpu time and virtual memory. LAPACK is already compiled for R

This is kind of like asking for a solution to x+1=x+1. Go back to linear algebra and look up Singular Value Decomposition, and decide if you really want to proceed. See also ?svd and package irlba. -- Sent from my phone. Please excuse my brevity. On April 20, 2016 4:22:34 AM PDT, A A via R-help <r-help at r-project.org> wrote: > > > >I have a situation in R where I would like

Dear expeRts, I have run some simulations under R 2.15.1 on a Mac, and I have rerun a sample of them under R 3.0.1 on Windows (and also for comparison under R2.14.1 on Windows). For most cases, I get exactly the same results in all three runs. However, for those cases that depend on principal components computed with prcomp, where the particular choice of the orthogonalization is arbitrary

Dear expeRts, I have run some simulations under R 2.15.1 on a Mac, and I have rerun a sample of them under R 3.0.1 on Windows (and also for comparison under R2.14.1 on Windows). For most cases, I get exactly the same results in all three runs. However, for those cases that depend on principal components computed with prcomp, where the particular choice of the orthogonalization is arbitrary

Hi, I'm trying to do PCA on a n by p wide matrix (n < p), and I'd like to get more principal components than there are rows. However, svd() only returns a V matrix of with n columns (instead of p) unless the argument nv=p is set (prcomp calls svd without setting it). Moreover, the eigenvalues returned are always min(n, p) instead of p, even if nv is set: > x <-

Dear all Some computations gave a matrix. The single value decomposition of it worked fine previously, after an system upgrade I get the following error: ----- > La.svd(x,256,256) Error in La.svd(x, nu, nv) : BLAS/LAPACK routine 'DLASCL' gave error code -4 ----- Erroneous Matrix: ftp://usys-ftp.ethz.ch/ITES/STEP/nussbaum/R/matrix-lapack-error4.RData /.csv Operating System: Debian 8

Dear R list users, the singluar value decomposition of a symmetric matrix M is UDV^(T), where U = V. La.svd(M) gives as output three elements: the diagonal of D and the two orthogonal matrices u and vt (which is already the transpose of v). I noticed that the transpose of vt is not exactly u. Why is that? thank you for your attention and your help Stefano AVVISO IMPORTANTE: Questo messaggio di

Hi all, I am trying to analyse a time series data and want to make trend-season decomposition using STL approach in R. However I found the decomposition result seems to be sensitive to data points even with the robust option. More specifically, suppose I have a few years of monthly data. Using stl, I got a decomposition T1 + S1 + R1. Then I deleted the most recent two or three data points, the

I am reading the Mining of Massive Datasets Book by Rajaraman and Ullman. It has a good explanation of Recommendation System at Chapter 9. But what are the relationship between 1) SVD (Singular Decomposition) 2) UV-Decomposition 3) NMF (Non-negative Matrix Factorization) In particular, it seems 2) and 3) can be very similar. Is it right? Thanks. -- View this message in context: