similar to: problem in install on ubuntu

Hi All, I'm still having significantly difficulty getting the quantreg library running in R. I'm running R on MEPIS using the debs created by Dirk Eddelbuettel and placed in apt testing. When I try to install quantreg using the install.packages() function it fails with: /usr/bin/ld: cannot find -lblas-3 Dirk was nice enough to send me a .deb for quantreg which installs without

I have a data set like this in one .txt file (cols separated by !): APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! APE!KKU!684! APE!VAL!! APE!UASU!! APE!PLA!1! APE!E!10! APE!TPVA!17122009! APE!STAP!1! GG!KK!KK! it contains over 14 000 000 records. Now

Dear all, It is my understanding that using 'importFrom' in the NAMESPACE of a package allows to avoid conflicts between different packages defining objects with identical names. However, I can still see conflicts while loading the package using 'library'. Here is a toy example, with a package 'foo' importing 'as.igraph' from the igraph package, and 'nj'

Dear all, I don't understand the following behaviour: Running compar.gee (in library ape ) with and without the option 'data', it give me different results Example: .... Start R .... > load("eiber.RData") > ls() [1] "gee.na" "mydata" "mytree" > library(ape) > # runnig with the option data= mydata > compar.gee(alt ~ R,

Hello, I've just downloaded and installed the RAqua onto my Mac and I have R up and running fine. Now I'm trying to get 'ape' downloaded and installed and having quite the difficulty. I am following the directions specified under 'Installing packages' where packages can be downloaded and installed from within R. I get the following error messages: 1: argument

Dear Sir or Madam, I am very new to R, and I am trying to install seqinr-package. In the manual I read that I need to install ape-package first, and I failed to do it. I had the following error messges: /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [ape.so] ?????? 1 ERROR: compilation failed for package 'ape' ** Removing

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

Folks I'm trying to use xfs_quota to keep track of disk space usage for my users. The documentation states that I should specify "uquota" as an option on the mount data in /etc/fstab. Yet, I cannot find the entry in fstab that corresponds to the Logical Volume that ends up being mounted on /home1. The system in question was installed on a single disk system. Later, after

I am not sure whether this would work or if there are other limitations that would block this very simplistic porting strategy to work. Since it looks so easy on paper, I expect it to be more complicated otherwise it would probably already have been done. According to the LLVM FAQ the important dependencies for LLVM are a unix-type shell and sed [1], but those dependencies are provided by APE

Let's say I would like to look inside the function corBrownian in library (ape). When I type in the function name I get the following, which is not nearly the detail that goes into this function. I am wondering how to begin cracking this function open (and others) so I can learn more about it and perhaps code my own corClass one day. Thanks. > corBrownian function (value = 1, phy, form

Hello all, I was checking the newest update of my library before submitting it to CRAN, using R 2.15.0 and Rtools for Windows 215 using Rcmd in the Command Prompt, on my x64 Windows7 laptop. I recently heard that for checking packages for CRAN submission one should use the option --as-cran; previously I was submitting packages, so I was trying that for the first time. The check proceeds fine

Dear all, I was testing the wonderful package APE. However upon testing a particular Newick's format tree - which I think to be a non-binary tree - it yields different result as expected. > library(ape) > tree.hiv <- read.tree(text="(rat,mouse,(human,chimp));") > is.binary.tree(tree.hiv) [1] TRUE Was that a bug in APE package? - Gundala Viswanath Jakarta - Indonesia

I am having trouble displaying a dendrogram of evolutionary relationships (a phylogram imported from the ape package) as the vertical component of a heatmap, but keeping the hierarchical clustering of the horizontal component. The relationships of the vertical component in the generated heatmap are not that of the dendrogram, although the ordering is. In more detail, I am attempting to generate

Hiya, will it be possible to add single song playback support like Monkey's Audio Image Link File to FLAC+CUE? This will allow the playing of single songs from 1 large FLAC file. Since FLAC can already embed the cuesheet inside the FLAC itself, the next step will be to allow the playback of the songs individually, allowing them to be added to playlists when playing singles. Please make

Dear FLAC developers, Thank you for your time and effort for creating such a great lossless compressor and make it freely available to the general public. I have a small feature request, which will make the life much easier for people like me who are converting from APE + CUE sheet to flac. The feature that I'm requesting is: Splitting flac files either according to CUE sheet or even

Hi, I would like to know about graphics for response surface in R. What are arguments for a best graphics? thanks, Bruno y <- c(66,39,43,49,58,17,-5,-40,65,7,43,-22,-31,-35,-26) x1 <- c(-1,1,-1,1,-1,1,-1,1,rep(0,7)) x2 <- c(-1,-1,1,1,0,0,0,0,-1,1,-1,1,0,0,0) wireframe( y ~ x1*x2 , scales = list(arrows = FALSE), drape = TRUE, colorkey = TRUE, screen = list(z = 30, x = -60),

Hi list users, Is there a comparison somewhere of the efficiency of decoding flac files, with respect to some benchmark related to cpu processing? As compared to, say, ape files? I ask because I have recently switched my entire archive from ape to flac. I have an old 400 mhz laptop in my office running xubuntu, which I run into a receiver. Works great. Since switching to flac, I notice the

Hi, I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, but octave3.0-headers depends on libblas-dev. The two blas packages seem to conflict, so r-base-dev and octave3.0-headers can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading

Having a problem running the ace command in ape. After reading my table into R and then putting the names of the rows in the table in same order as the tree I can't get ace to run and get the message Erreur dans as.matrix(x) : dims [produit 25] ne correspond pas ? la longueur de l'objet [0] This is the command I am using and each of the vectors used in the snalysis.

I have AudioFire2 1394 sound card. I installed ffado and jack server and they can works well. I can play music or movie through mplayer with audiofire2. But I have many ape/flac music. So I want to use foobar2000 under wine and hope foobar2000 can play through audiofire2. From google. seems wineasio can do it. I installed it but foobar2000 still can not work on audiofire2. Anybody can help me or