similar to: NLME: using the layout option with the plot command

I have a quick question regarding the use of identify to interact with points on a scatterplot. My question is essentially: can identify be used when one is plotting model objects to generate diagnostic plots? Specifically I am using NLME. For example, I am plotting the fitted values on the x axis vs a variable called log2game with the following code: plot(D2C29.nlme, log2game ~ fitted(.),

Dear r-bugs, When I create EPS files, they sometimes appear rotated in my LaTeX PDF document and sometimes they don't. Two examples: ## x1.eps is not rotated in LaTeX x <- seq(-1, 1, length=100) postscript("c:/x1.eps", height=3, width=4, horizontal=FALSE, onefile=FALSE, paper="special") plot(x, dnorm(x), type="l") dev.off() ## x2.eps is not

I am having good success in using pdf() to produce pdf graphics files for inclusion in documents processed by pdflatex [I'm using R 1.6.0 on Linux]. I am having one small problem consistently though, which I believe I also had with S-Plus's pdf.graph(): wasted space at the top of the graph which causes pdflatex to put the graph on a later page, when the current page has plenty of space.

Hi, I have found references for the following problem in the list archives, but no nice solution. So I decided to post one I came up with. The problem is that graphs output as eps files, for example using ps.options(onefile=FALSE, paper="special", width=8, height=8, horizontal=FALSE, pointsize=12) get rotated when I convert them to pdf using epstopdf. Both ghostview and

I use the following function to export some figures to .eps: p.eps <- function(p, fname, title = NULL, width, height) { postscript(file=fname, onefile=FALSE, paper="special", width=width, height=height, horizontal=FALSE) print(p + opts(title = title)) dev.off() } Whenever I have a page consisting of *only* figures exported in this way, Acrobat Reader shows them in

Dear list, I am using Sweave to build a small report. I want to produce a series of figures, each figure containing a number of plots and then have them included in the Sweave file. An example would be to : postscript(file = "ANCbwplot%03d.eps", onefile = FALSE, other options...) oldpar <- par(mfrow = c(2,2)) .... do lots of plots to produce a number of eps files .... par(oldpar)

HI, I would like to know if it's possible to create a postscript file with multiple graphs . I'm creating some graphs by the means of a loop and I want to save each graph in the same file (splitting making the device by the number of graphs). Do I have to use the par(matrix()) option, the layout() function or the split.screen() one ? Thanks Nolwenn

Dear list members, I'd like to perform a glm analysis with a hierarchically nested design. In particular, I have one fixed factor ("Land Use Classes") with three levels and a random factor ("quadrat") nested within Land Use Classes with different levels per classes (class artificial = 1 quadrat; class crops = 67 quadrats; and class seminatural = 30 quadrats). I have four

Dear R help, I am using Stata, and I use a Stata ado file (Rsource) to run R in batch mode within Stata Everything works fine .... except for the fact that I cannot export the graphics that I obtain with my computations written in my R source file I believe this is related to the global Rterm_options `"--vanilla"' that I need to precise to Rsource (otherwise it does not work) ...

Trying to get one Samba server to serve several printers through CUPS and host a virtual PDF "printer" at the same time. I've gotten them working separately, but not together, and I think I know why. In the smb.conf man page under "print command": "With printing = cups, and if SAMBA is compiled against libcups, any manually set print command will be ignored."

I hope someone familiar with the way Linux processes files can enlighten me on the following: I recently replaced an old Windows 2000 server with a new machine running CentOS 5.2. It uses Samba 3.2.7 to serve a network of Windows XP clients. We are a newspaper. We use Acrobat Distiller to batch-convert a folder of single-page PostScript files (for print) to a multipage PDF file (for

I hope someone familiar with the way Linux processes files can enlighten me on the following: I recently replaced an old Windows 2000 server with a new machine running CentOS 5.2. It uses Samba 3.2.7 to serve a network of Windows XP clients. We are a newspaper. We use Acrobat Distiller to batch-convert a folder of single-page PostScript files (for print) to a multipage PDF file (for

hello, i have a problem with the orientation of eps files produced with the postscript() command. i have generated some eps files with R using: postscript(file = filename, horizontal = FALSE, paper = "special", onefile = F ALSE, height = height, width = width, pointsize = pointsize) now, when i include these eps files into a standard paper document (ie. a4 paper, portrait orientation)

I'm having problems copying and saving lattice graphs using R-1.4.0 under Win2k. It seems I've see this alluded to recently in R-help. If I do the following example: > data(quakes) > xyplot(long ~ lat , data = quakes) And then try to copy or save the graph as either a metafile or bitmap or if I use any of the bitmap/metafile devices via (for example) >

Hi I have found some postings referring to the fact that one can try and understand why a particular model is failing to solve/converge from the verbose output one can generate when fitting a nonlinear mixed model. I am trying to understand this output and have not been able to find out much: **Iteration 1 LME step: Loglik: -237.4517 , nlm iterations: 22 reStruct parameters: subjectno1

Dear All, I am learning R so it's a very simple problem but I do not understand while I am not able to generate a graph from two vectors. when I type this code, it generates a very nice graph. pdf("mygraph.pdf") > attach(mtcars) > plot(wt,mpg) > abline(lm(mpg~wt)) > title("Regreesion of mpg") > detach(mtcars) > dev.off() But I am trying to create a

I have tried to find a neat way to include graphs from R in LaTeX documents, but have not succeeded (I work with a WinEdt/MikTeX combination). The two roads I have stumbled along so far are the following: *Generate postscript files and convert them into EPS files by means of GhostScript or other not so straightforward tools. *Generate pictex files and include these. None of these solutions have

Hi Guys, Do you any one know how to convert a long format table to an adjacency matrix used in sna? The long table looks like p1 p2 counts a b 100 a c 200 a d 100 b c 80 b d 90 b e 100 c d 100 c e 40 d e 60 and I want to convert it to an adjacency matrix which can be used in sna? Any methods will be appreciated! btw, besides sna package, is there any better package can be used in social

My goal is to create a graph with one column and three rows into a single graphic. The mfrow, mfcol, and layout functions all have the same effect: three graphs are produced in a single pdf file, having one graph per page. This is not what I want (I didn't want multiple pages). Just before I sent this post, I was able to generate the desired output with split.screen. Is this the expected

Hi I am following the model building strategy that is outlined in the Pinheiro and Bates book wrt including covariates but am having a problem with the plot. Basically I am using 4 covariates (1 of them is continuous) and 3 of them are fine but the 4th one is being shown as a scatterplot despite the fact that it is a factor. I have explicitly declared this to be a factor (pcat<-as.factor(pcat))