similar to: Installing bioconductor

I am running the last R version on SuSE 11.1. I installed the Bioconductor environment following the instructions on the web. As a consequence some core packages from Bioconductors were installed. I need to add some more packages. So I tried biomaRt as follows. It does not get installed correctly. Please see the following sequence. Thank you in advance. Maura >

Hi, I would liek to ask the list if any one can explain why there should be a discrepency in the directory sizes that are displayed when I use explorer on Windows. This has been reported to me by a user, I have never seen this before as I dont use windows if I can help it :-)... When I slect properties of a directory it has two enties Size and Size on disk As an example size says 33 bytes, size

--Apple-Mail-1--963012407 Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=US-ASCII; format=flowed Hi, I get exactly the same error message as in report no 6920. Furthermore, starting "update Bioconducter" the following message appears (running Mac OS X 10.3.4 (7H63)) : > {library(reposTools);update.packages2(getAllDeps=TRUE)} Synching your local package

Mrs and Mr My operative system is "Windows Vista" and can't update or install pakages of CRAN, the message for all pakages is for example: Erro en zip.unpack(pkg, tmpDir) : no fue posible abrir el archivo 'C:/Program Files/R/R-2.4.1pat/library/file8f653c7/MASS/chtml/MASS.chm' Help me thank you! Post data: Sorry my bad English Roberto Mario Domínguez Olivero Universidad

I have a mixture network with WinXP machines and IRIX (UNIX of Silicon Graphics) machines. In the machine with IRIX (O2) there was an old version of samba. It worked well. But recently I've downloaded. I installed this new version, and I spoiled the system. Now I don't know if I have to reconfigure the smb.conf only or if I have to install more pakages or if I have to reconfigure several

I'm sorry if the answer to my problem is buried in the archives. I have limited experience with R and I couldn't find a solution to my particular problem. I am running Mac OS X Aqua GUI v1.01 on a new G5 running os 10.3.8 with a 1.8Ghz processor and 1GB of sdram. I just downloaded bioconducter a week ago and I'm trying to cluster a matrix I created with a simulation with

Hello, im haveing problems of any kind (no zlib, no ssl, etc) even if those pakages are instaled, i can?t get gems to work.. thnx -- Sergio R. de la Garza P. Overclockers Mexico S.A. de C.V. 81-8334-2000 http://www.ocmexico.com http://pc-mexico.com -------------- next part -------------- An HTML attachment was scrubbed... URL:

Hello, One of my machines I got a report about 3 vulnerable packages (php4, ruby, openssl) in tomorrows security run output, but in today's security run output all of them disappeared, but nobody upgraded or removed the affected packages. I reinstalled portaudit, refreshd its database, but now it reports 0 affected pakages. The pkg_info command lists that three packages, so they are

Hello xapian users, The server I'm compiling on is a little odd. SunOS on a sun4 architecture. Fails when linking, gives the following, memcpy 0x10 /usr/local/gcc-3.3.2/lib/./libstdc++.a(ctype.o) ld: fatal: relocations remain against allocatable but non-writable sections collect2: ld returned 1 exit status *** Error code 1 make: Fatal error:

Hi Nguyen, > Subject: [R] install "multtest" and "preprocessCore" packages in > Bioconductor library > Date: Wed, 30 Nov 2011 09:57:36 -0800 > From: UyenThao Nguyen <unguyen at tethysbio.com> > To: r-help <r-help at r-project.org> > CC: uth.nguyen at ucdavis.edu <uth.nguyen at ucdavis.edu> > > Hi All, > > I've tried to

Hi, I am trying to install Bioconductor onto R version 2.7.0 for Windows. I installed R, then followed the instructions on http://www.bioconductor.org/download, which state that you should type the following: source("http://bioconductor.org/biocLite.R") biocLite() When I do that, I get the following error: Running biocinstall version 2.2.9 with R version 2.7.0 Your version of R

Dear all, for a CRAN-package that depends on another Bioconductor-package I find two things annoying and would like to know whether there are some workarounds: 1) Is there some inevitable problem that install.packages does not install uninstalled packages (on which the specified package depends) also from Bioconductor (in the correct version)? 2) In my understanding (please correct me if

I can't load the packages locfit, lokern and quantreg. When I try to load the 3 packages the R program says that the pakages are not properly installed. He says to see the note in ?library. I think that the error is because there is no built field in the 3 packages. What can I do to make the packages run. My OS is Windows XP. Thank you Rui Martins

I'm using gandalfn's ubuntu-dev-pakages. I had this bug on beryl before. If I set a custom shortcut for scale (in my case I want to initiate all viewports on the default shortcut <ctrl><alt>Up), initiate_edge is automaticaly set to TopRight, too. The Problem is, I don't want to use the active edges at all. So I go everytime into gconf-editor, remove TopRight from

Hello All, I have this Centos7 machine that"s dualbooted with Win7. It's Centos7 with Mate desktop. The upgrade to Centos7.1 was interrupted. I ssh-d into the machine and finished it manualy, by issuing the command package-cleanup --cleandupes and yum update Now I' missing some packages, after some re?nstalling, I can boot again. However, I can not log in. EM:apr 02

Dear all For my research, I am learning classification now. I was trying some example about classification tree pakages, such as tree and rpart, for instance, in Pima.te dataset have 8 variables (include class=type): library(rpart) library(datasets) pima.rpart <- rpart(type ~ npreg+glu+bp+skin+bmi+ped+age,data=Pima.te, method='class') plot(pima.rpart, uniform=TRUE) text(pima.rpart)

Dear All, Have just installed v2.5.1 on Windows XP. Works fine but I had quite a few pakages loaded for 2.5.0 (from contributed) and was wondering how I can get 2.5.1 to recognise them without having to reinstall them all. Is this possible or do I have to reinstall all the packages again? I required 2.5.1 for lme4 and matrix. Many thanks in advance.

Hi all, I require 2 RMySQL libraries in order to query from a database. 'RMySQL_0.7-4' (newest version) results in an error when more than 1 field is queried. ''RMySQL_0.5-11' (old version) resolves this issue where more than 1 field can be queried without any errors. However, other queries results in an error messeges (but no error messeges with 'RMySQL_0.7-4'

Hi, I am new to R. I am downloaded the installer for R 2.9.1, and that installed just fine. Then I want to install Biocondcutor packages. According to bioconductor website, I input the following commands. > source("http://bioconductor.org/biocLite.R") > bioLite() Error: could not find function "bioLite" What am I doing wrong here? Thanks -- View this message in

Hi Patrick, Greetings from !(sunny) Pittsburgh. What's the scoop on RCurl on windows (XP)? I've tried to install RCurl_0.92-0.zip and RCurl_0.9-3.zip, with both R 2.7.2 and R 2.8.0 from the RGUI (utils:::menuInstallLocal), and get the error "Windows binary packages in zipfiles are not supported". which (according to google's one and only hit) comes from a perl script.