Displaying 20 results from an estimated 1000 matches similar to: "strange behaviour with rotated viewports in grid"
2006 Jun 08
1
"reversed" dendogram
Dear All,
I am trying to find a way to plot a dendogram in reverse, that is,
if the terminal leaves are labelled 1-10 bottom to top (or left to
right), I would like to be able to plot it in a way such that if
would display 10-1 bottom to top or left to right. Any idea how to
achieve this?
Thanks in advance,
r.
Dr. Rafael Najmanovich
European Bioinformatics Institute
Wellcome Trust
2004 May 24
1
Mac OS X jpg
Hi,
I am using R 1.9.0 (2004-04-12) for Mac OS X. I am having trouble
printing to a jpg file. This only happens when I use R in batch (with
the BATCH option) mode. If I launch the R GUI or the command line
version and run the script from either, I have no problems. Only when
running in BATCH mode I get a file with the same name as my script
where I find the following message at the end:
2005 Jun 30
1
parsing '...' function argument?
Dear community,
I am writing a wrapper for '[' operator, which is a generic method
declared as function(x, i, j, ..., drop). It turns out that I need to
parse the '...' argument and this is where I am stuck. Generally what I
need is the following. Say the call is obj[1, 1, 1:10, 3] - here '1:10,
3' is passed into '...'. What I need to evaluate that '...'
2008 Jan 07
3
Finding windows DLLs
The XML package relies on libxml2.dll (e.g., bundled with the CRAN
binary) installed in library/XML/libs. Unfortunately,
c:/WINDOWS/system32/libxml2.dll will be found and loaded before
this.
Is there any programatic solution?
Thanks,
Martin
--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold
2005 Oct 03
1
Grid: constructing a gTree with grobs that use named viewports from a vpTree
I'm trying to create a layout with named viewports that I can use for
other functions. I create the viewport tree that I want, and a list
of grobs with the viewports describing where they should go.
library(grid)
vp <- vpTree(
viewport(layout=grid.layout(2,2), name="layout"),
children=vpList(
viewport(layout.pos.col = 1, layout.pos.row=1, name="tl"),
2007 Sep 30
1
clipping viewports
Dear useRs,
Why are the rotated blue and yellow boxes in the example below clipped outside of 6 x 6 inch window in the middle of the page?? Where does the 6 x 6 inch window come from? I would like to make use of the entire page.
> library(grid)
> pdf(file = "FarmMaps.pdf", paper = "a4")
> pushViewport(viewport(
+ width = unit(7.6, "inches"), height =
2008 Aug 17
1
Making use of names of viewports (grid)
The following code, though not brilliant, works on an A4 page. It
might look odd on other devices of a very different size.
=============X8------- cut here ----------------------------
require(grid)
wide <- 15
vps <- grid.layout(nrow = 3, ncol = 4,
widths = unit(rep(1, 4), rep("null", 4)),
heights = unit(c(99, 1, 99),
2007 Aug 30
1
suggesting \alias* for Rd files (in particular for S4 method documentation)
Hi,
I do not know if everybody finds index pages of the html-formatted R
help useful, but I know I am at least not the only one who uses them
extensively to get the overview of functions and methods in a package
(even for my own package). Problems arise, however, if a lot of S4
methods need to be documented blowing out the index with (generally
irrelevant) entries like:
2008 Feb 12
4
assigning NULLs to elements of a list
Dear developers:
I have just came across an (unexpected to me) behaviour of lists when
assigning NULLs to list elements. I understand that a NULL is a valid R
object, thus assigning a NULL to a list element should yield exactly the
same result as assigning any other object. So I was surprised when
assigning a NULL in fact removed the element from the list. Is this an
intended behaviour? If
2007 Oct 24
1
Rotated viewports in Grid
Hi all,
I'm trying to generate a plot containing a scatterplot, with marginal
densityplots for x and y.
However, when I try to generate a vertical densityplot, I get the
message "warning: can't clip to rotated viewport", and nothing shows
up. I'm probably misunderstanding how viewports are meant to be used,
so if someone could give me a hint, I'd be most grateful.
my
2007 Mar 25
1
controlling panel.width and panel.height in viewports
Dear all,
I'm trying to get a series of lattice levelplots to appear in
viewports in a particular way but struggling to exert fine control
over their appearence. There are two conditions: (a) I only want the
levelplot to appear (I don't want axes, colour key, etc) in the
viewport and (b) I want the levelplot to expand to the maximum
allowable space in the viewport while observing
2005 Feb 25
3
passing command line arguments to 'R CMD BATCH myScript.R'
Hi Community,
I have a question about how to pass command line parameters to R script
running in the batch mode. The problem is: there is a banch of data
files which are to be processed by R script called from a web-server,
i.e. in the batch mode. The web server generates data files and passes
their names calling 'R CMD BATCH' one by one for every file. Now the
question is how to
2008 May 04
1
texi2dvi instead of pdflatex in R2.7.0? and related bioc 2.2 builds
Dear lists:
I am somewhat puzzled by the use of texi2dvi/pdflatex in R2.7.0. When
building EBImage (bioconductor) with 2.7.0 I get the same error both in
Windows and Linux, which reads the following:
** building package indices ...
* DONE (EBImage)
* creating vignettes ... ERROR
/usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
Error in texi2dvi(file = bft, pdf = TRUE, clean =
2005 May 03
2
memory problem
Hello!
I am undertaking my first attempt at using compiled C code within R and
have run into this lovely problem when I call my C code (using .C).
The instruction at "0x10001d1b" referenced memory at "0x01fa2000". The
memory could not be "written".
Now this doesn't happen every time and furthermore I've tested the code
in plain C and it all works
2005 May 31
2
Problem going back to a viewport with gridBase
I am setting up base plots -- one in viewport A and and one in B. This part
works fine. But if I go back to A after having done B and add
horizontal lines it seems
to not use the correct coordinates. How do I tell it to resume using A's
coordinates? I am already using par(fig = gridFIG()) but it seems that that's
not enough to reestablish them. What happens is that when I go back to
2005 May 31
2
Problem going back to a viewport with gridBase
I am setting up base plots -- one in viewport A and and one in B. This part
works fine. But if I go back to A after having done B and add
horizontal lines it seems
to not use the correct coordinates. How do I tell it to resume using A's
coordinates? I am already using par(fig = gridFIG()) but it seems that that's
not enough to reestablish them. What happens is that when I go back to
2005 Feb 11
3
formatC with illegal input crashes Rgui (PR#7686)
Full_Name: Peter Ehlers
Version: rw2001pat (2005-02-03)
OS: Win XP
Submission from: (NULL) (136.159.61.115)
formatC(1, flag="s") crashes Rgui.
Similarly for flag=[SnZ].
Stupid input, of course, but I'm error-prone.
Peter
2007 Feb 08
1
Help with interfacing C & R
Hi all,
I was trying to set up an interface for using C functions in R. For this, my R file hello2.r is:
---------------------------------------------------------------------------------
hello2 <- function(n) {
.C("hello", as.integer(n))
}
hello2(3)
--------------------------------------------------------------------------------
and my hello.c file is:
2007 Jul 23
2
R2.6 bug in arithmetics of S4 classes inherited from 'array', or intended behavior?
Hi,
I have an S4 class directly derived from 'array' as shown in the code
below (EBImage package of Bioconductor 2.1, devel), it simply contains
array adding a couple of slots:
setClass ("Image",
representation (colormode="integer", filename="character",
compression="character", resolution="numeric", features="list"
),
2005 Mar 16
1
returning NULL from .Call call
Dear R developers,
I've just encountered one "feature" of R-C extensions. If it is known, I
would be thankful for any hints why it works this way (I found the way
around, which is also mentioned here, but maybe it is not the best one).
If it is however unknown, it might be considered for a "wish list".
Consider a simple "aka" C function (the original