similar to: help in R

Hello, All, GWAF 1.2 R.Version() is below. system(lme.batch.imputed( phenfile = 'phenfile.csv', genfile = 'CARe_imputed_release.0.fhsR.gz', pedfile='pedfile.csv', phen='phen1', covar=c('covar1','covar2'), kinmat='imputed_fhs.kinship.RData', outfile='imputed.FHS.IBC.GWAF.LME.output.0.txt' )) Gives the error messages: Error in

Hi - I'm just starting out with R and have come up against a problem with what should be a simple operation. I'm plotting a range of safety standards for 7 different chemicals. I don't want the standard box and whisker plot - I just a dot for each value. Whilst using "plot.default" I get the error "invalid xlim value" - which is confusing since using the same script

I had some problem when I compiled openssh-1.2.2 on FreeBSD 3.3 with enable skey option like this: ./configure --with-tcp-wrappers --with-skey .. .... ...... gcc -o sshd sshd.o auth-rhosts.o auth-krb4.o auth-pam.o auth-passwd.o auth-rsa.o auth-rh-rsa.o pty.o log-server.o login.o servconf.o serverloop.o bsd-login.o md5crypt.o -L. -L/usr/local/ssl/lib -lssh -lz -lcrypto -lutil -lpam -lskey -lwrap

Hello to the list I'm using a Rscript launched via the linux terminal as the title of this mail explains. The following is the code of the Rscript : myRscript.r -------------------------------- 1 #!/usr/bin/Rscript 2 3 #Read data 4 data=read.table("/home/morisseau/stage/recherche/gwas/data/CFHLC5/CFHLC_format_files_rm_07052010/output/windowstemp.txt") 5 6 data=t(data) 7

I have a few questions about GenABEL, gwaa data. 1) is there a universal way that most GenABEL people use to add more individuals into a 'gwaa' data? For example, I have a 'gwaa' data, but I need to add some dummy parents, for 'gwaa at phdata', it's easy to add these rows, but for 'gwaa at gtdata', I think I need to create SNP data as '0 0 0 0 0.....'

Hi, I have a problem concerning discrepances between R (which I use) and Statistica (which uses my supervisor). I can't say what is the origin of these differences but unfortunately my supervisor doesn't know that either. Our response variable is number (or presence/absence) of parasites in rodents and explanatory variables are presence/absence of several alleles. The rodents were

allo vous tous vois l''erreur Counting objects: 66, done. Delta compression using up to 4 threads. Compressing objects: 100% (52/52), done. Writing objects: 100% (66/66), 26.30 KiB, done. Total 66 (delta 3), reused 0 (delta 0) -----> Ruby/Rails app detected -----> Installing dependencies using Bundler version 1.3.0.pre.2 Running: bundle install --without development:test

Hi, I am currently writing code to input a few thousand files, run them through the Random Forests package, and then output corresponding results. When I use the code below: zz<-textConnection("ex.lm.out", "w") sink(zz)

Hi, I'm running Samba 2.0.4b on a Debian Linux (v2.2) PC. If I look at the "log.smb" file there are many messages: Attempt to locate null printername! Internal error? We have a number of print queues defined and they work fine. Here is a portion of the /etc/printcap: ================================================= # # Copyright (c) 1983 Regents of the University of California.

How can I delete both rows and columns that do not meet a particular cut off value. Example: > d <- rbind(c(0, 1, 6, 4), + c(2, 5, 7, 5), + c(3, 6, 1, 6), + c(4, 4, 4, 4)) > f <- as.matrix(d) > f [,1] [,2] [,3] [,4] [1,] 0 1 6 4 [2,] 2 5 7 5 [3,] 3 6 1 6 [4,] 4 4 4 4 I would like to delete all

Bottom Line Up Front: How does one reshape genetic data from long to wide? I currently have a lot of data. About 180 individuals (some probands/patients, some parents, rare siblings) and SNP data from 6000 loci on each. The standard formats seem to be something along the lines of Famid, pid, fatid, motid, affected, sex, locus1Allele1, locus1Allele2, locus2Allele1, locus2Allele2, etc In other

Hello, Thanks to recent changes in the SVN, I was able to successfully build LLVM under Windows in the following environments: 1. Cygwin; 2. MinGW/MSYS; 3. "gcc -mno-cygwin" (a.k.a MinGW on Cygwin). For 3., I've had to make a few manual changes to the build system. Care is needed because non-Cygwin external commands require Windows paths and Cygwin's make does not like path

On Thu, Sep 3, 2015 at 6:45 PM, Kostya Serebryany <kcc at google.com> wrote: > Did you build the Postgres code with -fsanitize-coverage=... ? Yes: CC = clang CFLAGS = -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -Wno-unused-command-line-argument -g -O0 -fsanitize=address

Thanks. I think nabble is good for programming questions. Bear with me if I'm incorrect. Data: Genomics SNP information Goal: I need to add Chromosome and SNP position to the data frame I'm using through apply. I'd like to add new column from text processed through apply function. For example: 10:60523:T:G (Column 2) CHR: 10 Position: 60523 Dataset: chr rs ps n_miss allele1

Comments interspersed, and some code at the end. On Mon, 5 Mar 2018, Sariya, Sanjeev wrote: > Thanks. I think nabble is good for programming questions. Bear with me > if I'm incorrect. You may have found R-help archives at Nabble, but R-help has nothing to do with Nabble. > > Data: Genomics SNP information I know almost nothing about using R for genomics. > Goal: I need

Looks correct. Can you post the output of libFuzzer here? Something like #0 READ cov: 0 bits: 0 units: 97701 exec/s: 0 #1 pulse cov: 732 bits: 0 units: 97701 exec/s: 0 #2 pulse cov: 737 bits: 0 units: 97701 exec/s: 1 #4 pulse cov: 858 bits: 0 units: 97701 exec/s: 2 #8 pulse cov: 880 bits: 0 units: 97701 exec/s: 4 On Thu, Sep 3, 2015 at 10:50 AM, Greg Stark

--- Makefile.in | 3 +++ 1 files changed, 3 insertions(+), 0 deletions(-) diff --git a/Makefile.in b/Makefile.in index 98486f4..fee32b7 100644 --- a/Makefile.in +++ b/Makefile.in @@ -171,11 +171,14 @@ cleantests: # the source directory. distclean: clean rm -f Makefile config.h config.status + rm -f lib/dummy popt/dummy zlib/dummy rm -f $(srcdir)/Makefile $(srcdir)/config.h

Read the Posting Guide... (see message footer) ... some relevant things you can find there: a) Yes, this appears to be about how to use an R base function so it is on topic b) Post a reproducible example (include some sample data, preferably using the dput function) c) Post using plain text so the mailing list doesn't convert it for you and mangle things in a way you did not intend. -- Sent

Hello members, Can I ask question for apply, adding new column to data frame on this e-mail list? Thanks! [[alternative HTML version deleted]]

It has been observed that binaries contents are depending on the order of linked objects. This order is caused by GNU make's wildcard function and the position of sources on filesystem. This change tries to prevent this kind of randomness. Also consider building using -j1 flag to make it even more reproductible. Change-Id: Ie8eee7f336e6f1fa2863c4150d967afd15519f1d Bug: