Displaying 20 results from an estimated 200 matches similar to: "need automake/autoconf help to build RnetCDF and ncdf packages"
2008 Mar 13
0
need automake/autoconf help to build RnetCDF and ncdf packages
Greetings all,
I recently tried to install RNetCDF from within R (install.packages)
on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already
installed). This resulted in an error because the netcdf header files
are installed in /usr/include/netcdf-3 rather than /usr/include which
is where RNetCDF looks for them. This problem was described in a 2006
post (see below), but no
2003 Dec 11
1
bug + insufficient doc in R CMD INSTALL (PR#5703)
Hello,
I believe I have found a bug in the R INSTALL script
(src/scripts/INSTALL.in). The problem comes up when a user tries to
specify more than one "--config-args" (or, I imagine, "--config-vars") on
the R CMD INSTALL line. In such a case, no error message is generated, but
the first specification is silently overwritten by the second
specification. The process therefore
2008 Dec 23
1
NetCDF within R: installation assistance
Greetings. I am attempting to add NetCDF libraries within R, and have
failed. We have R version 2.8, and are running on a 64-bit Redhat Linux
2.6.18 kernel:
Red Hat Enterprise Linux Client release 5.2 (Tikanga)
Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5
09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
I have run the installation instructions found at
2006 Mar 08
1
problem installing RNetCDF
Hello all,
I set 'UDUNITS_PATH' and 'NETCDF_PATH' successfully to my custom places and
then
% R CMD INSTALL RNetCDF_1.1-3.tar.gz
and got this:
...
checking for executable suffix...
checking for object suffix... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for main in -lnetcdf... yes
checking for main in -ludunits...
2010 Mar 16
2
Problem in installing ncdf package
Dear R communities
Could you please help me with the problem I encounter while trying to install the ncdf package?
download.packages("ncdf", "/home/user/soft/R/library/")
cd /home/user/soft/R/library
R CMD INSTALL ncdf_1.6.tar.gz # fail
sudo R CMD INSTALL ncdf_1.6.tar.gz # fail
cd /home/user/soft/
# download
2009 Apr 21
1
joined R-today
Friends,
I am a newbie to R. Just installed and started with R. I installed netcdf
library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the
following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/usr/local/netcdf/include
-with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz
The installation was successful. But when i try to use ncdf inside R, i
2004 Mar 13
1
Installing ncdf package
Hi
I used the command
R CMD INSTALL ncdf
to install ncdf package in linux. Can somebody explain to me what might
be wrong. Thanks. Below is the error.
* Installing *source* package 'ncdf' ...
Special note:
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for
2010 Mar 09
1
ncdf installation
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
**
2010 Oct 09
1
ncdf installation in R
Hi All,
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz
I get this
2013 Mar 07
1
install error - Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2011 Sep 05
1
Receive "unable to load shared object RNetCDF.o" during R INSTALL of RNetCDF
On a Red Hat Linux cluster I am seeing the following after multiple
other packages were successfully installed. The error seems to suggest
that RNetCDF.o was not copied to the appropriate lib folder. The admin
user performing the install has the required privileges to perform the
install. Words of wisdom are greatly appreciated:
R CMD INSTALL
2013 Mar 07
0
install Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2013 Apr 27
1
Loading of package RNetCDF fails
Dear Pavel Michna [maintainer of the package] (and copy to R-help
Mailing List)
When I try to load the package RNetCDF (after install from CRAN) I get
this message:
> library("RNetCDF",
lib.loc="/Library/Frameworks/R.framework/Versions/3.0/Resources/library")
Error : .onLoad a ?chou? dans loadNamespace() pour 'RNetCDF', d?tails :
appel : NULL
erreur : I/O error
2006 Apr 12
0
Solution: Making RNetCDF work on Fedora Linux
Dear R users who might like to use the package RNetCDF on Fedora Linux:
Fedora (versions 4 and 5) users might have noticed that the default
install of the netcdf and netcdf-devel packages from the Fedora Extra
archive is inconsistent with the R package RNetCDF. The attempt to
install RNetCDF results in a failure in the configure stage because the
header & library info for netcdf cannot
2005 Nov 30
1
RNetCDF seg fault
Dear RNetCDF developers,
I haven't been able to load RNetCDF in R for a while. I wonder if this
is a bug or a problem with my installation.
I'm using Debian testing.
> library(RNetCDF)
Segmentation fault
5:01pm(dongda)~>R --version
R 2.2.0 (2005-10-06).
Copyright (C) 2005 R Development Core Team
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to
2011 Jan 12
2
RNetCDF: retrieving variable names and units
Dear List,
does anybody has experience with the RNetCDF package? I manage to open a connection and copy data from a ncdf file but would need a way to automatically retrieve variable names (ideally all of them from one file) and units from the file.
Any ideas?
Jannis
2012 Dec 05
1
catching errors in RNetCDF
Dear R community,
I quite frequently run into errors while using the RNetCDF package which
do not seem to be recognised as normal R errors and, hence, do not stop
the execution of the code making it hard to debug the code.
Consider, for example:
library(RNetCDF)
con <- create.nc('test.nc')
test <- try(var.get.nc(con, 'dummy'))
In this case, some sort of error message
2013 Apr 25
0
Problem with package RNetCDF when attached
I have a problem with the RNetCDF package in MacOSX 10.8.3, R3.0.0.
If you have a solution, it would be great !
Thanks a lot.
Marc Girondot
> install.packages("RNetCDF")
essai de l'URL
'http://cran.at.r-project.org/bin/macosx/contrib/3.0/RNetCDF_1.6.1-2.tgz'
Content type 'application/x-gzip' length 2071758 bytes (2.0 Mb)
URL ouverte
2011 Jun 17
0
Inconsistent results from var.get.nc in RNetCDF
Hello -
I am having trouble extracting data from NetCDF data files using
RNetCDF. The data files each have 3 dimensions (longitude, latitude,
and a date) and 3 variables (latitude, longitude, and a climate
variable).
Here is some of the output from print.nc for clarity:
-----
dimensions:
month = UNLIMITED ; // (1368 currently)
lat = 3105 ;
lon = 7025 ;
variables:
float
2009 Apr 21
1
ncdf,RNetCDF
Friends,
Someone please share your experience in installing ncdf and RNetCDF in
fedora10. I am not able make it work as it throws me the following error. My
R version is 2.8.0.
> library(ncdf)
unable to load shared library '/usr/lib/R/library/ncdf/libs/ncdf.so':
/usr/lib/R/library/ncdf/libs/ncdf.so: cannot restore segment prot after
reloc: Permission denied
Error in library(ncdf)