Displaying 20 results from an estimated 600 matches similar to: "lme: how to compare random effects in two subsets of data"
2003 Feb 13
1
fixed and random effects in lme
Hi All,
I would like to ask a question on fixed and random effecti in lme. I am
fiddlying around Mick Crawley dataset "rats" :
http://www.bio.ic.ac.uk/research/mjcraw/statcomp/data/
The advantage is that most work is already done in Crawley's book (page 361
onwards) so I can check what I am doing.
I am tryg to reproduce the nested analysis on page 368:
2005 Sep 19
1
How to mimic pdMat of lme under lmer?
Dear members,
I would like to switch from nlme to lme4 and try to translate some of my
models that worked fine with lme.
I have problems with the pdMat classes.
Below a toy dataset with a fixed effect F and a random effect R. I gave
also 2 similar lme models.
The one containing pdLogChol (lme1) is easy to translate (as it is an
explicit notation of the default model)
The more parsimonious
2014 Feb 18
4
[LLVMdev] Optimizing math code
Hello LLVM-dev,
I’m writing some crypto math code in C, and trying to make it as simple and portable as possible, so that there won’t be any unforeseen platform bugs. Ideally, I’d like the compiler to as much work as possible for me, and I’m wondering if you know how to make clang (or gcc, for that matter) do some of this. So I have a couple of questions. If this is the wrong list to ask for
2014 Feb 18
2
[LLVMdev] Optimizing math code
On Feb 17, 2014, at 6:38 PM, Stephen Checkoway <s at pahtak.org> wrote:
>
> On Feb 17, 2014, at 8:10 PM, Michael Hamburg <mike at shiftleft.org> wrote:
>
>> First, addition. I have multiprecision integer objects, and I’d like to add them component-wise (likewise, subtract, negate, mask…). For example:
>>
>> struct mp {
>> int limb[8];
>> }
2007 Jan 20
1
aov y lme
Dear R user,
I am trying to reproduce the results in Montgomery D.C (2001, chap 13,
example 13-1).
Briefly, there are three suppliers, four batches nested within suppliers
and three determinations of purity (response variable) on each batch. It is
a two stage nested design, where suppliers are fixed and batches are random.
y_ijk=mu+tau_i+beta_j(nested in tau_i)+epsilon_ijk
Here are the
2014 Oct 09
4
file system replication
Hi Everyone,
I need to keep 2 systems identical. Mostly e-mail directories, web
directories, mysql, etc. The goal here is to have a 2nd system ready to go
it the first one starts to exhibit hardware issues.
What are options to have this happen? I'm going out on a limb and thinking
rsync but I haven't used it past just simple use cases.
Can anyone provide some insight for me?
CentOS
2009 May 20
1
Extracting correlation in a nlme model
Hi R users:
Is there a function to obtain the correlation within groups
from this very simple lme model?
> modeloMx1
Linear mixed-effects model fit by REML
Data: barrag
Log-restricted-likelihood: -70.92739
Fixed: fza_tension ~ 1
(Intercept)
90.86667
Random effects:
Formula: ~1 | molde
(Intercept) Residual
StdDev: 2.610052 2.412176
Number of Observations: 30
Number
2006 Jan 23
2
Newer version of Zaptel with 1.0 branch of *
Is it possible to run the CVS-HEAD/Stable version of Zaptel (1.2 whatever)
with an older version of Asterisk? I'm running 1.09, but I was wondering if
I could get at the newer echo cancellers like KB1 and MG2 without upgrading
to Asterisk 1.2?
I'm going out on a limb here to try and fix a serious echo problem on a TDM
+ BT PSTN line in the UK
Thanks for your suggestions everyone
--
2004 Sep 21
2
Bootstrap ICC estimate with nested data
I would appreciate some thoughts on using the bootstrap functions in the
library "bootstrap" to estimate confidence intervals of ICC values
calculated in lme.
In lme, the ICC is calculated as tau/(tau+sigma-squared). So, for instance
the ICC in the following example is 0.116:
> tmod<-lme(CINISMO~1,random=~1|IDGRUP,data=TDAT)
> VarCorr(tmod)
IDGRUP = pdLogChol(1)
2010 Jun 11
3
[LLVMdev] Bignum development
On Fri, Jun 11, 2010 at 3:28 PM, Bill Hart <goodwillhart at googlemail.com> wrote:
> Hi Eli,
>
> On 11 June 2010 22:44, Eli Friedman <eli.friedman at gmail.com> wrote:
>> On Fri, Jun 11, 2010 at 10:37 AM, Bill Hart <goodwillhart at googlemail.com> wrote:
>>> a) What plans are there to support addition, subtraction,
>>> multiplication, division,
2011 Mar 14
0
Non-constancy of variances in mixed model.
Hi, I've been doing an experiment, measuring the dead-zone-diameters of
bacteria, when they've been grown with paper diffusion disks of
antimicrobial. There are two groups, or treatments - one is bacteria
that have been cultured in said antimicrobial for the past year, the
other group is of the same species, but lab stock and has not gone had
any prior contact with the antimicrobial.
2013 Mar 20
2
xmpp priority setting and GoogleVoice
I just wanted to send out some information that will hopefully help
others. I don't know, maybe I'm the only one that's been having
problems with this. I've been pulling my hair out for a while
wondering why Google would not send my incoming calls to my Asterisk
box. The calls would just roll to voice mail and no packets ever
reached Asterisk. This has happened on two separate
2019 Apr 11
1
decrypt.rb
> On 11 April 2019 17:44 David Salisbury via dovecot <dovecot at dovecot.org> wrote:
>
>
> On 4/11/2019 1:50 AM, Aki Tuomi wrote:
> >
> >> ...
> >> So, not being an expert at encryption, what are the ramifications of
> >> those digests being read as different values in the two different
> >> places???? I do notice that the
2010 Nov 12
1
wind rose (oz.windrose) scale
Dear list,
I trying to make a wind rose plot whit the command oz.windrose, from plotrix
package. My data, a matrix of percentages with the rows representing speed
ranges and the columns indicating wind directions was generated
using bin.wind.records command from same package:
[,1] [,2] [,3] [,4] [,5] [,6] [,7]
[1,] 0.4405286 0.0000000 0.1468429 0.4405286 0.4405286
2007 Mar 06
0
different random effects for each level of a factor in lme
I have an interesting lme - problem. The data is part of the Master
Thesis of my friend, and she had some problems analysing this data,
until one of her Jurors proposed to use linear mixed-effect models. I'm
trying to help her since she has no experience with R. I'm very used to
R but have very few experience with lme.
The group calls of one species of parrot were recorded at many
2012 Oct 26
2
deconstructing curve into rising and falling limbs
hello,
I have some data that looks similar to this (only not as nice as this):
Y <- c(abs(rnorm(100, 0.10, .1)), seq(.10, 1.0, .3)+rnorm(1, 0, .5) ,
seq(0.8, 4.0, .31)+rnorm(1, 0, .5)
, seq(3.9, .20, -.2)+rnorm(1, 0, .5) , abs(rnorm(100, 0.13, .1)) , seq(.10,
1.2, .35)+rnorm(1, 0, .5)
, seq(0.7, 6.0, .31)+rnorm(1, 0, .5) , seq(5.9, .23, -.18)+rnorm(1, 0, .5) ,
abs(rnorm(50, 0.18, .1)) )
2017 Jun 08
0
Rainbow in loop
Does:
rainbow(3)[1]
rainbow(3)[2]
rainbow(3)[3]
... solve your issue?
B.
> On Jun 8, 2017, at 8:20 AM, WRAY NICHOLAS <nicholas.wray at ntlworld.com> wrote:
>
> Hi R folk I have a distance time graph for a locomotive and at various times
> different events occur on board the loco. I want to put a vertical line on the
> speed time graph for each event, but I
2017 Jun 08
2
Rainbow in loop
Hi R folk I have a distance time graph for a locomotive and at various times
different events occur on board the loco. I want to put a vertical line on the
speed time graph for each event, but I want to colour each different kind of
event differently to see visually whether there's any pattern to these events
happening. I could just create a vector of colours and use abline which is easy
2002 Dec 17
1
lme invocation
Hi Folks,
I'm trying to understand the model specification formalities
for 'lme', and the documentation is leaving me a bit confused.
Specifically, using the example dataset 'Orthodont' in the
'nlme' package, first I use the invocation given in the example
shown by "?lme":
> fm1 <- lme(distance ~ age, data = Orthodont) # random is ~ age
Despite the
2007 Jan 19
0
(no subject)
Dear R user,
I am trying to reproduce the results in Montgomery D.C (2001, chap 13,
example 13-1).
Briefly, there are three suppliers, four batches nested within suppliers
and three determinations of purity (response variable) on each batch. It is
a two stage nested design, where suppliers are fixed and batches are random.
y_ijk=mu+tau_i+beta_j(nested in tau_i)+epsilon_ijk
Here are the