similar to: interpreting anova summary tables - newbie

Hello, everybody. We are working on a tool for mutation testing. The work is still in progress and far away from being done. However, we have got some results already. And we would like to share them with you. But, let me give you a brief introduction first. ### Mutation Testing In a nutshell, Mutation Testing is a way to evaluate a quality of a test suite. The approach suggests introducing a

Hello All, Started out awhile ago trying to select columns in a dataframe whose names contain some variation of the word "mutant" using code like: names(KRASyn)[grep("muta", names(KRASyn))] The idea then would be to add together the various columns using code like: KRASyn$Mutant_comb <- rowSums(KRASyn[grep("muta", names(KRASyn))]) What I discovered though, is

Hi, I have a data set like this: Mutant Rep Time OD 02H02 1 0 0.029 02H02 2 0 0.029 02H02 3 0 0.023 02H02 1 8 0.655 02H02 2 8 0.615 02H02 3 8 0.557 02H02 1 12 1.776 02H02 2 12 1.859 02H02 3 12 1.668 02H02 1 16 3.379 02H02 2 16 3.726 02H02 3 16 3.367 306 1 0 0.033 306 2

Hey Paul, Thanks for the reply! If you wanted you could try my radio stream, http://stream.socorock.com:8000/socorock.ogg.m3u - that's really good news, I think I'm gonna pick up one of these things soon! What a great way to listen to radio. Cheers, Jordan On 02/26/2012 12:01 AM, Paul Webster wrote: > The Grace and Logitech devices can play streaming OGG. I have different models of

Hello Everyone, I have what I think is a complex text parsing task. I've provided some sample data below. There's a relatively simple version of the coding that needs to be done and a more complex version. If someone could help me out with either version, I'd greatly appreciate it. Here are my sample data. haveData <- structure(list(profile_key = structure(c(1L, 1L, 2L, 2L, 2L,

Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is going on?

Hello all, Sorry if this is an FAQ. I have been trying to search the archives without success. I have a dataset (ChiPs microarray) where the experiment to experiment variability is very high but where within an experiment, the data nearly always goes in the "right" (hypothesis confirming) direction. I am trying to figure out the right way to use R to do the statistics and generate

Hello all, Sorry if this is an FAQ. I have been trying to search the archives without success. I have a dataset (ChiPs microarray) where the experiment to experiment variability is very high but where within an experiment, the data nearly always goes in the "right" (hypothesis confirming) direction. I am trying to figure out the right way to use R to do the statistical analysis and

Version of R: Windows Version 2.0.0 The experimental design contains two plant lines - a control (C) and a mutant (M) - grown out three separate times in plots A, B, C. The design is unbalanced: In plot A, 9 control plants were grown with 29 mutant plants. In plot B, 8 control plants were grown with 20 mutant plants. In plot C, 8 control plants were grown with 22 mutant plants. The

Hello All, This will probably be easy for some but isn't for me. Currently am working on a text mining exercise. Want to be able to predict whether cancer patients got KRAS testing, and, if so, whether the test yielded a result of wild type/negative or mutant/positive. I've begun with a "bag-of-words approach" that looks at the count of specific terms in the medical records and

Hi all, I'm working on microarray and currently analyzing the microrarray data using limmaGUI. Loop design has been applied in this experiment. This is a 2X2 factorial experiment where there are control and treatment at 2 different time points, week 6 and 9. The experimental design is almost the same as the limmaGUI work example: Weaver Data set. I would like to look at the effect of

I knew it couldn''t possibly go right. First attempt at upgrading a 0.1.0 host trashed the networking config majorly. In defense of 0.1.1, I did have an odd networking config (since XCP had problems with the built in Broadcom ports, I pif-forgetted them and let Linux handle them. If it weren''t for the mutant network config, I bet 0.1.1 would have done ok. More seriously,

Hello, I have a large (919 X 919), hierarchically clustered heatmap that I would like to read the labels off of. I have tried saving the figure in pdf format and enlarging it until I can see the labels, but if I make the labels small enough to read (so that they don't overlap) using cexRow and cexCol, they do not appear in the pdf. The limit seems to be anything below cexRow or Col = 0.06.

Hey guys, I want to send an email via ROR and I have put this code at the very end in the config/environment.rb file- ActionMailer::Base.delivery_method = :smtp ActionMailer::Base.perform_deliveries = true ActionMailer::Base.logger = nil ActionMailer::Base.raise_delivery_errors = true ActionMailer::Base.smtp_settings = { :address => "[my smtp server]", :port => 25, :domain

I''m trying to change the password complexity requirements in pam.d/system-auth using augeas. I can append the values (lcredit=-1, ucredit=-1, etc) onto the correct place, but if another value is already present (i.e. lcredit=-2), the onlyif match statement doesn''t seem to support checking regular expressions inside of strings. How do I check that any numeric value exists in the

Hmmm.... So I was just trying the extlookup function that comes with puppet 2.6.1. It now lets you do this: $version = extlookup("rsyslog_version", "present", "packages") which, according to the documentation: # This will look for a version configured in packages.csv and then in the rest as configured # by $extlookup_precedence if it''s not found anywhere

Does facter support NICs that are not named ethX? I happen to use custom names on my systems. Just a quick look at the code I don''t see why it wouldn''t but the behavior I am seeing is very different. -- You received this message because you are subscribed to the Google Groups "Puppet Users" group. To post to this group, send email to puppet-users@googlegroups.com. To

   hi   Games do not need to setup just unzip the file program Win RAR and then start the game immediately with multiple levels  If your pc does not support the SWF files you can download the Advance flash player 5 software from here  Advance flash player download Open it to run the game file**   games (4wheelmadness (2.2 Mb     A giant truck ride and use your skills in jumping

I was wondering how to configure the puppet clients to only listen, not to periodically pull configs down from the puppetmaster. I''d rather push the configs out from the puppetmaster with puppetrun... At a guess I need to set runinterval to 0 in /etc/puppet/puppet.conf? -- You received this message because you are subscribed to the Google Groups "Puppet Users" group. To post

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Hello, I read and find a way (well, there seems to be several equal implementations) to collect the ssh keys of machines. However they all give only the choice to choose between the key formats. But is there a way to collect both keys of a machine, the rsa _and_ the dss key (and maybe the rsa1 too)? I didn''t find a way to solve this as