similar to: Sweave, mle and curve

I am using emacs-21.3 when writing R functions on Linux debian, and I am trying to follow the advice i R-exts.pdf (2.1.1) regarding indentation. That is, I set 'c-default-style' to "bsd" and 'c-basic-offset' to 4. However, while this gives me the intended indentation in C code, it doesn't change the behavior in R code; I still get an indentation of size 2. This is my

I'm using emacs-21.4 on debian unstable, together with the latest ESS implementation. I try to change indentation to 4 by following the advise in "R-exts": It results in the following lines in my .emacs file: (custom-set-variables ;; custom-set-variables was added by Custom -- don't edit or cut/paste it! ;; Your init file should contain only one such instance.

Here is the file minimal.Snw: \documentclass[a4paper]{article} \title{R tips and tricks} \author{Murray Jorgensen} \usepackage{Sweave} \begin{document} \maketitle \section*{Entering data from a single variable} The following data are transformed tensile strength measurements on polyester fibres. They may be found on the file \texttt{TENSILE.DAT}. We may enter this data into R using the

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Hello. I want to write my notes in Sweave in my own language (spanish). But my language has accents and when I run Sweave in R to translate my Snw file into the tex file the accents are translated into unrecognizable characters. For example, the word "cami?n" (truck) is translated into "cami??n" Somebody knows how can I do it? One solution I don't like is using a

Hi all I love Sweave; use it all the time. But I recently received a new computer, and ever since I have had a problem I've never seen before. For example, I place the following in my Snw file: <<>>= sms <- read.table("http://www.sci.usq.edu.au/staff/dunn/Datasets/applications/popular/smsspeed.dat", header=TRUE) attach(sms) sms.lm <- lm( Time ~ Age*Phone,

Hi All, I've reproduced the example from Prof. Friedrich Leisch's webpage. When I write sweave("Example-1.Snw") OR sweave("Example-1.Rnw"), (yes, I renamed them). I get the following error: Writing to file example-1.tex Processing code chunks ... 1 : echo term verbatim Error: chunk 1 Error in library(ctest) : there is no package called 'ctest' Also while

Dear R-users, I'm running an MLE procedure where some ODEs are solved for each iteration in the maximization process. I use mle2 for the Maximum likelihood and deSolve for the ODEs. The problem is that somewhere along the way the ODE solver crashes and I get the following error message: DLSODA- Warning..Internal T (=R1) and H (=R2) are such that in the machine, T + H = T on the next

I think I've gotten my Emacs/Sweave/R system set up correctly, thanks to Vincent and Jim, but I haven't been successful getting my first document produced. I'm trying to use one of Friedrich Leisch's examples, http://www.ci.tuwien.ac.at/~leisch/Sweave/example-1.Snw. I cut and pasted the text into a document sweaveexample.Rnw in Emacs. It seemed to be processed successfully with R:

Hallo! Trying to configure Xemacs to work with .snw files on windows 2000. Tried to do it how it is described in the FAQ for Sweaves. When starting xemacs with and Snw file *ESS* buffer contains hundrets of lines and the few last ones. (ess-loop-timeout . 500000) (inferior-ess-primary-prompt . ^) (inferior-ess-secondary-prompt . ^) (comint-use-prompt-regexp-instead-of-fields . t)

Dear list, I have tried to setup my Xemacs for use with Sweave, which I indend to learn. I have followed the instructions in the Sweave FAQ, that is to say, I put (defun Rnw-mode () (require 'ess-noweb) (noweb-mode) (if (fboundp 'R-mode) (setq noweb-default-code-mode 'R-mode))) (add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode)) (add-to-list

I can't get Emacs to automatically do syntax highlighting of Sweave files. I have followed Friedrich's suggestion for code to insert into my .emacs file. The complete section from my .emacs file is given below. When I load a *.Snw file, font is white until I press M-x, then the first code and document chunks get highlighted, but not the rest of the file. Latex and Noweb menus are

Hi, So far I used Sweave to create pdf reports. I used xtable to create some tables in the report. But now I would like to use the same snw file to generate an HTML version. The xtable output breaks the RweaveHTML driver. library(R2HTML) Sweave('analyseLFQ.Snw', driver = RweaveHTML) Error in match.arg(options$results, c("Robj", "html", "hide")) :

Dear list, I have data on insect survival in different cages; these have the following structure: deathtime status id cage S F G L S 1.5 1 1 C1 8 2 1 1 1 1.5 1 2 C1 8 2 1 1 1 11.5 1 3 C1 8 2 1 1 1 11.5 1 4 C1 8 2 1 1 1 There are 81 cages and

Hi I started using Sweave and LaTeX but have a (smaller) problem. As I am not yet very fluent in LaTeX I do the following: I texify my snw-file to look for errors in my LaTeX and correct them. However, if I have the following chunk, I get an error when texifying: ... \usepackage{Sweave} ... <<echo=F, results=tex>>=

Hi, I've just tried to run example-3 from Friedrich Leish. I'm using R 1.8.1 and MiKTeX 2.2 on Windows XP. I go === > library(tools) > Sweave("example-3.Snw") Writing to file example-3.tex Processing code chunks ... 1 : term hide 2 : echo term verbatim 3 : term tex 4 : term verbatim eps pdf You can now run LaTeX on example-3.tex === The file example-3.tex

> -------- Original Message -------- > Subject: Re: [R] How to extract R codes that embedded in a HTML file > using Stangle? > Date: Thu, 17 May 2007 17:01:30 +0000 > From: Tao Shi <shitao at hotmail.com> > To: ligges at statistik.uni-dortmund.de, lecoutre at stat.ucl.ac.be > CC: r-help at stat.math.ethz.ch > : <jmcconnell at

Hi - I'm running R 1.8.1 (compiled from source) on Mac OS X 10.3 (Panther). I find that, if Apple's X11 application is not running, Sweave gives an error when it wants to create a pdf or eps figure. E.g., in the package's own example-1.Snw file a boxplot is created at chunk 2: <<fig=TRUE,echo=FALSE>>= boxplot(Ozone ~ Month, data = airquality) @ Normally this will create

I'm working on a survival analysis project and, based on previous work of my colleagues on similar projects, am trying to estimate an AFT model with a generalized gamma distribution. When I execute the following code: >flexsurvreg(timesurv ~ cycles + rcycle + cyctime, dist="gengamma") I get the following error message: Error in optim(optpars, minusloglik.flexsurv, t = Y[,

Hi All, I am running Ubuntu Feisty (7.04) on a Thinkpad T41. I've installed the nowebm package for Ubuntu. Working from this HowTo: http://www.ci.tuwien.ac.at/~leisch/Sweave/example-1.Snw I try to compile the example *.Snw as in the Sweave manual: mdj at lapmdj:~/Desktop/Sweave/example1$ noweb example-1.Snw Can't open output file Despite the error, a *.tex file is produced. Now I am