similar to: Error in fun(...) : couldn't find function "assignInNamespace"

When I try to run the example from Variogram with an lme object, I get an error (although summary works): R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 ... > fm1 <- lme(weight ~ Time * Diet, BodyWeight, ~ Time | Rat) Error: couldn't find function "lme" > Variogram(fm1, form = ~ Time | Rat, nint =

The problem is not specific to redefining the q function, but to the interaction of assignInNamespace and setGeneric. The latter requires, roughtly, that the environment of the function being replaced by an S4 generic is (or is the descendent of) the environment in which it lives. E.g., the following demonstrates the problem % R --quiet --vanilla > assignInNamespace("plot",

Hi Bill, Ideally, your coworker would just make an alias (or shortcut or whatever) for R that passed --no-save to R. I'll try to look into this though. Michael On Wed, Apr 18, 2018 at 1:38 PM, William Dunlap via R-devel <r-devel at r-project.org> wrote: > A coworker got tired of having to type 'yes' or 'no' after quitting R: he > never wanted to save the R

Dear all R gurus, I have following syntax: y = c(1:10) chippy <- function(x) { y[5] = x sin(cos(t(y)%*%y)*exp(-t(y)%*%y/2)) } curve(chippy, 1, 20, n=200) But I am getting error while executing : Error in xy.coords(x, y, xlabel, ylabel, log) : 'x' and 'y' lengths differ In addition: Warning message: number of items to

A coworker got tired of having to type 'yes' or 'no' after quitting R: he never wanted to save the R workspace when quitting. So he added assignInNamespace lines to his .Rprofile file to replace base::q with one that, by default, called the original with save="no".. utils::assignInNamespace(".qOrig", base::q, "base")

In my .Rprofile for Windows, I had the following functions defined to mirror a few features I miss from linux: (a) replace setwd() with a version that stashes the current directory so it can be easily restored (b) writes a short version of the current R directory to the Windows title bar: I can always see where I am, with multiple Rgui windows. (c) creates a cd() shorthand for setwd(), but

Hello, assignInNamespace refuses to assign an object to a name that is not already used in the namespace. Something like this would make it possible: --- src/library/utils/R/objects.R (revision 56024) +++ src/library/utils/R/objects.R (working copy) @@ -252,8 +252,9 @@ stop("environment specified is not a package") ns <- asNamespace(substring(nm, 9L))

>>>>> Michael Lawrence <lawrence.michael at gene.com> >>>>> on Wed, 18 Apr 2018 14:16:37 -0700 writes: > Hi Bill, > Ideally, your coworker would just make an alias (or shortcut or > whatever) for R that passed --no-save to R. I'll try to look into this > though. > Michael Yes, indeed! As some of you know, I've

I'm trying to install the ordinal package (http://popgen.unimaas.nl/~plindsey/rlibs.html). I downloaded ordinal03.tgz and untarred it. rmutil was previously installed (and appears to work ok.) Then I installed ordinal: [root at localhost ~]# R CMD INSTALL /home/chippy/Download/ordinal * Installing to library '/usr/lib/R/library' * Installing *source* package 'ordinal' ... **

Full_Name: c fillekes Version: Version 2.2.1 (2005-12-20 r36812) OS: Gentoo Linux kernel 2.6.12 Submission from: (NULL) (129.116.71.233) "Not Available" is of course not a numeric: R > is.numeric (NA) [1] FALSE But for some reason, all arithmetic operations on NA's are in fact numeric, even if it's with other NA's. > is.numeric (NA+NA) [1] TRUE >

Hi, I'm trying to plot several lag.plots on a page, however the second plot replaces the first one (although it only takes up the upper half as it should): par(mfrow=c(2,1)) a<-sin(1:100) b<-cos(1:100) lag.plot(a) lag.plot(b) What's the trick to this? I'm using R 2.2.1 (2005-12-20 r36812) on Ubuntu Linux. Thanks, Gad -- Gad Abraham Department of Mathematics and

Hello all. I have a large .txt file whose variables are fixed-columns, ie, variable V1 goes from columns 1 to 7, V2 from 8 to 23 etc. This is a 60GB file with 90 variables and 60 million observations. I'm working with a Pentium 4, 1GB RAM, Windows XP Pro. I tried the following code just to see if I could work with 2 variables but it seems not possible: R : Copyright 2005, The R Foundation

dear R users not sure why I am not able to install tkrplot. > install.pacakges ("tkrplot", dependencies=TRUE) ... Configure: error: no acceptable C compiler found in $path ... well, I am using debian testing 2.6.15, R Version 2.2.1 (2005-12-20 r36812) #whereis gcc gcc: /usr/lib/gcc thank you --------------------------------- [[alternative HTML version

Full_Name: Lutz Prechelt Version: 2.2.1 OS: WinXP SP2 Submission from: (NULL) (130.133.8.114) This command plot(0, 0, xlim=c(3, 5), ylim=c(0, 10, 17)) should complain about 'ylim' (because it has three elements). However, it does in fact (in my german error message at least) complain about 'xlim' instead: Fehler in plot.window(xlim, ylim, log, asp, ...) : ung?ltiger

hi I'm using the GDD package (in a 64bits fedora machine using R 2.3.0) to save in a png file some plots and i noticed that changing the lwd parameter does not change my line width I tried the same script in a Windows based R (2.2.1 r36812), using no GDD, and it worked. Does anybody has a clue? My testing script is something dumb like this: library(GDD) GDD("pres24.png",

When trying to update packages after the sysadmin updated R on my unix box I got errors on some packages. For example for chron: * DONE (chron) mkdir: cannot create directory `/usr/lib/R/library/00LOCK': Permission denied ERROR: failed to lock directory '/usr/lib/R/library' for modifying I got similar messages for spatial and cluster and warnings for other packages. Finally I got:

Fresh Download of the newest R for windows R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but

Dear all, I am running R : Copyright 2005, Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 On a mac 10.4.5 I am having trouble with my package. The trouble is the following: In my package I have integrated three files in my src folder. 1- simplematch.C a .C file 2- ordering.f a fortran file 3- Makevars : PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) I am not sure if that last file is

I have been using levelplot but have had trouble calling it inside functions - something seems to go wrong when it's not called directly from the R command prompt. Simplest reproducible example: $ R --vanilla > library(lattice) > levelplot(matrix(1:4,2,2)) - This gives a nice plot in soothing pastel colors. Now, with a file lptest.r containing 2 lines: library(lattice)

Hi, people. Here is a transcript of a "R --vanilla" session: ======================================================================> R : Copyright 2005, The R Foundation for Statistical Computing Version 2.2.1 (2005-12-20 r36812) ISBN 3-900051-07-0 R est un logiciel libre livr?? sans AUCUNE GARANTIE. Vous pouvez le redistribuer sous certaines conditions. Tapez 'license()'