similar to: Multiple Figure environment through Java

Hello all, I have a data file table.txt which i have attached. I am trying to pass the columns as arguments to a function "totnorm" where i am displaying a total normalization plot. The function is given below: totnorm<-function(x,y){scale<-sum(x)/sum(y);xlab<-colnames(x);ylab<-colnames(y);x1<-x[[1]];y1<-scale*y[[1]];plot(x1,y1,xlab=xlab,ylab=ylab,col=6, col.lab=4);}

Hello all, I have a data file table.txt which i have attached. I am trying to pass the columns as arguments to a function "totnorm" where i am displaying a total normalization plot. The function is given below: totnorm<-function(x,y){scale<-sum(x)/sum(y);xlab<-colnames(x);ylab<-colnames(y);x1<-x[[1]];y1<-scale*y[[1]];plot(x1,y1,xlab=xlab,ylab=ylab,col=6, col.lab=4);}

[Re-directing to R-help, as this is more appropriate there.] I tried copying the snippet of data into the windows clipboard and tried it: > dat <- read.table("clipboard", header=T) > dat Name Weight Height Gender 1 Anne 150 65 F 2 Rob 160 68 M 3 George 180 65 M 4 Greg 205 69 M > str(dat) `data.frame': 4 obs.

Hello all, I am using the heatmap.2 function in the gplots package. I want to supress the reordering of the columns of the data matrix i pass to the function. I used the statement, heatmap.2(z,Colv=FALSE,dendrogram="row",col=redgreen(75)) where z, is the matrix of data. The output i want should have the rows reordered along with the dendrogram and the columns should be in the original

I have another issue.i have a function which calculates the log2(col i /col2) value, where i stands for columns 3,4,...etc. data<-read.table("table.txt", header=TRUE) iratio<-function(x){ for(n in 3:ncol(data)){ z<-log2(data[x,n]/data[x,2]) } } Where x- the row number of the data frame(data). i want to store the ratios for each row in a object z, which can be accessed

Hello, I am trying to display a plot produced in R as part of an Applet. Stating more clearly, i want to display a scatter plot(X axis data:1,2,4,5 and Y-axis data:4,6,5, 7)produced in R as an Applet. How can this be done? Please let me know. Thanks, Vasu. [[alternative HTML version deleted]]

Hi all, I am trying to display a matrix of plots(images), for example a 3*3 matrix of 9 image plots, such that when a user clicks on a image i can show the enlarged plot. I tried the multiple graphic device(using mfcol=c(3,3) and mfg), but it creates multiple plots in a single image file. So, i won't be able to highlight a particular plot when the user clicks on it. To be more clear, can i

Hi all, I am trying to display a matrix of plots(images), for example a 3*3 matrix of 9 image plots, such that when a user clicks on a image i can show the enlarged plot. I tried the multiple graphic device(using mfcol=c(3,3) and mfg), but it creates multiple plots in a single image file. So, i won't be able to highlight a particular plot when the user clicks on it. To be more clear, can i

I have a data frame which has the following data. data<-read.table("table.txt",header=TRUE) data X14A_U133A_StatPairs X14A_U133A_Detection X14B_U133A_Signal 1 AFFX-BioB-5_at 403.0 409.3 2 AFFX-BioB-M_at 757.3 574.4 3 AFFX-BioB-3_at 284.4 327.3 4 AFFX-BioC-5_at

I am a grad student and am working on a project where i need to integrate java and R. I have a front end in java and i need to call R functions and be able to dispaly the plots and graphs produced by R on my java front end. I came across some tools like SJava and rserve...but am not sure which best suits my application. Your suggestion will be really helpful. Thanks, vasu. [[alternative HTML

Hi all, Am trying to read data from a .txt file in such a way that i can access the column names too. For example, the data in the table.txt file is as below: Name Weight Height Gender Anne 150 65 F Rob 160 68 M George 180 65 M Greg 205 69 M i used the following commands: data<-scan("table.txt",list("",0,0,0),sep="") a<-data[[1]] b<-data[[2]]

Hi all, We're using Rserve and RandomForest to do classification from within a Java program. The total is about 4 lines of R code: library('randomForest') x y future fit<-randomForest(x,y,no.action=na.roughfix,importance=T,proximity=T) p<-predict(fit, future) What is very frustrating is that we have tried this two different ways (both work in R): 1. Load x, y, and future

Hi, I want to run the R-function ctree (package party) from Java over Rserve with the following Java-Code: try{ RConnection v = new RConnection(); v.voidEval("library(party)"); v.voidEval("try(load(\"C:\\Documents and Settings\\daten2.rda\"))"); v.voidEval("try(pdf(\"C:\\Documents and Settings\\test4.pdf\"))"); v.voidEval("plot

You can pass the entire df, example: > data(iris) > iris$sp = as.character(iris$Species) > o=.jarray(lapply(iris, .jarray)) > .jcall("C",,"df",o) df, 6 variables [0]: double[150] [1]: double[150] [2]: double[150] [3]: double[150] [4]: int[150] [5]: String[150] Java code: public class C { static void df(Object df[]) { int n;

Hi guys I have tried compiling this attached code, I made all the buffers 320, there is no trace of a 160 buffer, but I get a " SpeexEncoder requires 320 samples to process a Frame, not 160" error. Maybe there's something I'm missing, here's my code: import java.io.IOException; import java.io.FileOutputStream; import java.io.File; import

Dear all I wrote a routine. At the end of each cycle of the loop I would like to save the result (plot) in a postcriptfile. Of course if I just use dev.print in the following way: dev.print(device=postcript, 'c:/Rfigures/plot_1.ps") I overwrite my results with the second cycle of the loop. I suppose there is a way to define the file name so that several plots are

Hi, I am facing one problem of fetching R warning messages in Java Code using Rserve. It is easier to trap R Error messages by using catching RSrvException. I came to know one way of fetching R Warning messages, i.e. using "withCallingHandlers", below is my Java Program, which uses withCallingHandlers of R : import org.rosuda.JRclient.*;

Hello, I want to import R-output via Rserve to Java, especially for the function ctree from the package party. Rserve is working properly. Yet, I only get the predictions with the Java code try{ RConnection c = new RConnection(); ... c.voidEval("modell <- ctree(...)"); REXP y = c.eval("nodes(modell,1)[[1]]$prediction"); ...

Is there a ruby equivalent for the phpinfo() php function that displays all the variables and environment settings ? Thanks, vasu. -- Posted via http://www.ruby-forum.com/.

Charles, Greg, the problem is that Apple's FreeType on Leopard uses CF calls (albeit just to get files), so it breaks on fork. (The message is moot, because the whole point of using fork is to *not* use exec). In any case the solution is to compile your own version of freetype, fontconfig and cairo without any CF or Carbon API. Fortunately most recent versions of FreeType will do so