similar to: markov models with msm

I'm working with a dynamic system that I've started to analyse using msm(I've emailed to chris, orignator of the program, separately, but maybe he's on holiday). I'd like to know if anyone has considered the relation between the markov analysis done with msm on the one hand, and dynamic system analysis done with MATLAB? That is, I'm working with a set of empirical data that

Hello Chris, I am trying to fit a 4 state multi-state model using hidden markov routine in the msm package. 1. initial parameters: twoway4.q <- rbind(c(0, 0.25, 0, 0.25), c(0.166, 0, 0.166, 0.166), c(0, 0.25, 0, 0.25), c(0, 0, 0, 0)) ematrix <- rbind( c(0, 0.01, 0, 0), c(0.01, 0, 0.01,0), c(0, 0.1, 0, 0), c(0, 0, 0, 0)) 2. the model: msm_covariates_sexandage <- msm(state ~

A major update of the "msm" package for continuous-time Markov and hidden Markov multi-state models is now available from CRAN. Hidden Markov models with general, continuous response distributions are now supported. These models are used for Markov processes which can only be observed through the value of some noisy marker. Censored states are now supported at any observation time.

A major update of the "msm" package for continuous-time Markov and hidden Markov multi-state models is now available from CRAN. Hidden Markov models with general, continuous response distributions are now supported. These models are used for Markov processes which can only be observed through the value of some noisy marker. Censored states are now supported at any observation time.

Hello, I'm writing about msm. It may be that consistent users of Markov models have a good idea as to what constitutes workable data for a model. I think of general rules, in basic statistical studies where n is limited to exclude fairly precise figures in the lower range. On the other hand Markov models don't seem to be often enough used for parameters to be as well laid out. I also

Thank you for your prompt answer. The breathing signal observations are the amplitude values as a function of time and phase. According to our model the hidden states are the different breathing types. Subjects, whose respiratiion process is regular, are likely to breathe, keeping the same cycle pattern/type, for many consecutive cycles. therefore dwelling in the same hidden state. The more

Greetings, I'm using MSM (mutli-state markov modeling) package to study the progression of fibrosis in U.S hepatitis C population. I find this is a very fascinating tool for an applied researcher like myself. I have a four stage progression only model without any absorbing stage, also assuming no misclassification error in the data for the time being. I also have a couple covariates in the

Hello, I'm wondering if anyone has used the msm package to compute the steady state probabilities for a Markov model? thanks, Russell

I am reading the comprehensive on-line documentation about msm. The positive side is that it seems it has been designed for biomedical statistics, like Clinical Trials. The bad side is that it does not seem to model observations sequences that are not independent but instead are autocorrelated, as it is my case. I did not find any mention to correlated observations therefore I assume the authors

I solved the problem in one more (and more elegant) way. So here's the program again. Where does R stand on the Anderson-Goodman test of 1957? I hunted around and nobody seems to be doing this in R. Is it that there has been much progress after 1957 and nobody uses it anymore? # Problem statement: # # You are holding a dataset where firms are observed for a fixed # (and small) set of years.

Dear all, I need to estimate intensity and probability matrices by the continuous-time markov model... in a first time I used "msm" and it works perfectly. Nevertheless, I have to do other estimations that need programming the likelihood. Is it possible to see somewhere the likelihood used in the msm package? I have readen the papers about likelihood estimation of continuous-time

Dear R community, I am looking for an R package or other software to study hidden Markov models. I need to be able to incorporate multivariate emissions and covariates for the transition probabilities. The msm package seems almost perfect for my purpose, but I do not think it allows multivariate emissions. I will be grateful for your suggestions. All the best, -- Emilio A. Laca One

--- On Mon, 3/12/12, aleksandr shfets <a_shfets at mail.ru> wrote: > From: aleksandr shfets <a_shfets at mail.ru> > Subject: Fwd: Re[2]: [R] B-spline/smooth.basis derivative matrices > To: "Vassily Shvets" <shv736 at yahoo.com> > Received: Monday, March 12, 2012, 5:15 PM > > > > -------- ???????????? ????????? > -------- > ?? ????:

Dear all, I would like some help to writing the likelihood function for the continuous-time markov model, even if it can be calculated with the "msm" package, I need to know how it is calculated Thank you Luis [[alternative HTML version deleted]]

Dear All, I am a bit struggling with the many packages for Markov models available in R. Apologies for now posting a code snippet, but I am looking for some guidance here. Please consider a set like the one below (which you can get with data<-read.csv('http://dl.dropboxusercontent.com/u/5685598/data_table.csv') ). ID therapy age1 age2 EFS 7308 ormo_lunga 78

For all outputs except DSI we have a 1:1 relationship between connectors and encoders and the driver is relying on the atomic helpers: we can drop the custom ->best_encoder() and let the core call drm_atomic_helper_best_encoder() for us. Signed-off-by: Boris Brezillon <boris.brezillon at free-electrons.com> --- drivers/gpu/drm/msm/edp/edp_connector.c | 10 ----------

GEM object functions deprecate several similar callback interfaces in struct drm_driver. This patch replaces the per-driver callbacks with per-instance callbacks in msm. The only exception is gem_prime_mmap, which is non-trivial to convert. Signed-off-by: Thomas Zimmermann <tzimmermann at suse.de> --- drivers/gpu/drm/msm/msm_drv.c | 13 ------------- drivers/gpu/drm/msm/msm_drv.h | 1 -

--- drivers/gpu/drm/msm/mdp/mdp4/mdp4_dsi_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp4/mdp4_dtv_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp4/mdp4_lcdc_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp5/mdp5_cmd_encoder.c | 9 --------- drivers/gpu/drm/msm/mdp/mdp5/mdp5_encoder.c | 8 -------- 5 files changed, 41 deletions(-) diff --git

--- drivers/gpu/drm/msm/mdp/mdp4/mdp4_dsi_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp4/mdp4_dtv_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp4/mdp4_lcdc_encoder.c | 8 -------- drivers/gpu/drm/msm/mdp/mdp5/mdp5_cmd_encoder.c | 9 --------- drivers/gpu/drm/msm/mdp/mdp5/mdp5_encoder.c | 8 -------- 5 files changed, 41 deletions(-) diff --git

VBLANK callbacks in struct drm_driver are deprecated in favor of their equivalents in struct drm_crtc_funcs. Convert msm over. Signed-off-by: Thomas Zimmermann <tzimmermann at suse.de> --- drivers/gpu/drm/msm/disp/dpu1/dpu_crtc.c | 2 ++ drivers/gpu/drm/msm/disp/mdp4/mdp4_crtc.c | 2 ++ drivers/gpu/drm/msm/disp/mdp5/mdp5_crtc.c | 15 ++++++++++ drivers/gpu/drm/msm/disp/mdp5/mdp5_kms.c