Displaying 20 results from an estimated 1000 matches similar to: "plot() and points() precision control"
2007 Jun 28
2
aov and lme differ with interaction in oats example of MASS?
Dear R-Community!
The example "oats" in MASS (2nd edition, 10.3, p.309) is calculated for aov and lme without interaction term and the results are the same.
But I have problems to reproduce the example aov with interaction in MASS (10.2, p.301) with lme. Here the script:
library(MASS)
library(nlme)
options(contrasts = c("contr.treatment", "contr.poly"))
# aov: Y ~
2004 Jul 27
1
re: help with lattice plot
Dear List,
I have been using R to create an xyplot using the panel function within
lattice libraries. This plot is based on the data supplied in R named
'Oats'. The graph represents oat yield by nitro level with an overlay of
each variety of oats for each nitro level.
I have three questions regarding this graph:
1) I cannot seem to specify the type of symbol used by the plot, even
though
2009 Oct 30
1
How to properly shade the background panels of an xyplot?
Dear R users,
this is a follow up of this message
http://tolstoy.newcastle.edu.au/R/e6/help/09/05/13897.html
I'm reproducing the core of it for convenience.
> //
> / data(Oats, package = "MEMSS") /
> / tp1.oats <- xyplot(yield ~ nitro | Variety + Block, /
> / data = Oats, /
> / panel = function(x, y, subscripts, ...) { /
2004 Apr 23
1
Weirdness with choose.files on Microsoft Windows (PR#6818)
Full_Name: Kevin Wright
Version: 1.8.0
OS: Windows 95
Submission from: (NULL) (170.54.59.160)
This bug also happens to me using R 1.9.0 on Windows 2000.
Took me a long time to create a reproducible bug, but I think I have succeeded.
I suspect my test function has a bug, but I don't see anything wrong. Plus, the
bug only shows up when selecting certain filenames. Nearest I can speculate,
2009 Oct 10
1
lattice auto.key drop unused levels
The following code produces a legend ("key") that mentions the unused
levels of Block.
library(MEMSS)
xyplot(yield~nitro, subset=(Block=="I" | Block=="II"), data=Oats,
group=Block, auto.key=T)
and adding "drop.unused.levels=T" does not fix it. And in fact even
the following does not solve the problem:
xyplot(yield~nitro,
2006 Nov 30
3
model stubs with view/controller specs: error_messages_for??
How would I set up a model stub so that <%= error_messages_for
''some_model'' %> doesn''t complain?
I started going down this road: @some_model.stub!
(:errors).and_return(ActiveRecord::Errors.new)
but it seems like a long, hopefully uneccessary road.
Cheers,
Michael
2009 Apr 21
3
broken example: lme() + multcomp() Tukey on repeated measures design
I am trying to do Tukey HSD comparisons on a repeated measures expt.
I found the following example on r-help and quoted approvingly elsewhere.
It is broken. Can anyone please tell me how to get it to work?
I am using R 2.4.1.
> require(MASS) ## for oats data set
> require(nlme) ## for lme()
> require(multcomp) ## for multiple comparison stuff
> Aov.mod <- aov(Y ~ N + V +
2010 Jan 19
1
A model-building strategy in mixed-effects modelling
Dear all,
Consider a completely randomized block design (let's use data(Oats)
irrespoctive of the split-plot design it was arranged in). Look:
library(nlme)
fit <- lme(yield ~ nitro, Oats, random = ~1|Block, method="ML")
fit2 <- lm(yield ~ nitro + Block, Oats)
anova(fit, fit2)
gives this:
Model df AIC BIC logLik Test L.Ratio p-value
fit 1 4 624.3245
2009 Oct 12
3
xyplot does not find variable in data
When we call a lattice function such as xyplot, to what extent does
the "data" designation cause the function to look inside the "data"
for variables?
In the examples below, the "subset" argument understands that
"Variety" is a variable in the data.
But the "scales" argument does not understand that "nitro" is a
variable in the data.
2006 Sep 23
1
variance-covariance structure of random effects in lme
Dear R users,
I have a question about the patterned variance-covariance structure for the random effects in linear mixed effect model.
I am reading section 4.2.2 of "Mixed-Effects Models in S and S-Plus" by Jose Pinheiro and Douglas Bates.
There is an example of defining a compound symmetry variance-covariance structure for the random effects in a
split-plot experiment on varieties of
2008 Apr 16
1
transposition problem
Hi use Rs,
I have a csv file:
"1989-90","1990-91"
Barley,23,34
Oats,15,16
Which I want to turn into:
year, Barley, Oats
1 "1989-90", 23, 15
2 "1990-91",34,16
Transpose doesn't quite do it, is there a standard way?
Cheers,
Geoff Russell
2000 Mar 13
1
I can't get multiple interfaces to work
I've looked through all the doc and searched the list archives, but I just
can't seem to get it to work. I have a Linux box with 5 ethernet
interfaces, 3 of which have winboxes I'd like to include in my little Samba
network. I'm able to get it far enough for each winbox to see the linbox,
but they can't see each other.
Here's my setup:
Winboxes Linbox
Win2k -
2006 Jul 25
1
mysql cluster database.yml setup
im trying to deploy my app on our staging server and am running into an
issue.
we have a MySQL NDB cluster for the staging box. this basically means that
the staging box should be able to use MySQL via localhost and it will
automatically know it''s in a cluster. When running queries, it will go out
to the real DB boxes instead of localhost to fetch the data.
AFAIK, the clustering setup
2011 Nov 29
2
Help needed in reproducing a plot
Hello,
can anybody tell me how to produce a plot like the one in
http://cran.r-project.org/web/packages/lme4/vignettes/Implementation.pdf
on page 13, Figure 6?
The data is stored in:
library(nlme)
data(Oats)
Cheers
--
View this message in context: http://r.789695.n4.nabble.com/Help-needed-in-reproducing-a-plot-tp4119603p4119603.html
Sent from the R help mailing list archive at
2017 Oct 10
1
Unbalanced data in split-plot analysis with aov()
Dear all,
I'm analysing a split-plot experiment, where there are sometimes one or
two values missing. I realized that if the data is slightly unbalanced,
the effect of the subplot-treatment will also appear and be tested
against the mainplot-error term.
I replicated this with the Oats dataset from Yates (1935), contained in
the nlme package, where Variety is on mainplot, and nitro on
2008 Feb 25
1
Realtime Queue Status for Agents
Hello,
I am having a problem which stems from the fact that the Agents that
handle my call queues are unaware if there are are people waiting in the
queue. I have found the following configuration options but they are
not very helpful.
in queues.conf:
announce=xxx
The "announce = XXX" option in queues.conf makes Asterisk play the XXX
announcement to the member of the queue who
2009 Jul 15
1
Error in simulation R-code
Dear List,
I have got error message when I run the R-code. Can anyone has a suggestion?
v.code <- df.bm7[,c(10:31)]; v.code[1:3,]
names(v.code)
CM = v.code # variable binomial code
sim.sp <- function(data,CM,n,N)
{
C <- matrix(rep(NA,N),ncol=1)
for(i in 1:N)
{
j <- n
xx <- which(colSums(CM[j,])==1)
V <- names(xx)
V <- paste(V,
2007 May 03
1
Double DTMF digits
When dtmfmode is set to inband for SIP, and i originate a call from sip
out to the PSTN, I can hear the DTMF digit twice in the audio stream.
Once very briefly and once for normal duration.
Our Theory: While Asterisk is parsing the DTMF, for a fraction of a
second, while the end user generated DTMF is being detected, the DTMF is
passed inband. Once the DTMF is detected Asterisk silences it
2007 Apr 23
1
extract from a data frame
hello,
I'd like know how to do to extract data from a frame for example
how can I do to extract only the data where variety=victory or variety=golden rain
thanks.
> Oats
Block Variety nitro yield
1 I Victory 0.0 111
2 I Victory 0.2 130
3 I Victory 0.4 157
4 I Victory 0.6 174
5 I Golden Rain 0.0 117
6 I Golden Rain
2006 Oct 09
1
split-plot analysis with lme()
Dear R-help,
Why can't lme cope with an incomplete whole plot when analysing a split-plot
experiment? For example:
R : Copyright 2006, The R Foundation for Statistical Computing
Version 2.3.1 (2006-06-01)
> library(nlme)
> attach(Oats)
> nitro <- ordered(nitro)
> fit <- lme(yield ~ Variety*nitro, random=~1|Block/Variety)
> anova(fit)
numDF denDF F-value