similar to: background computation, &

I've been asked in private, (and am replying BCC to the asker), >> I saw your post on the R-help archives page about the possibility of >> porting a function from S-Plus called peaks() to R. I am looking for >> some way to locate peaks in a simple x,y data set, and thought that R >> might be the way to go. "of course" it is the way to go, don't get

Hi there again, I have a problem with the "parse"-command. First of all, I show you in a simplified way, what I am trying to do and what "R" answers: > test [1] "u.g$par1, u.g$par2" > mode(test) [1] "character" > ausdruck <- parse(text = test) Error in parse(file, n, text, prompt) : syntax error in "u.g$par1,"

Dear "R-help"ers, using snow on socket connections, I ran into the following error > cl <- makeSOCKcluster(hosts) Error in socketConnection(port = port, server = TRUE, blocking = TRUE : all connections are in use with "showConnections(all=T)" showing 50 open connections. As - for administrative reasons - I would prefer to use snow's SOCK capabilities (instead

Hi, this is not a genuine Dovecot bug, more a nuisance. It applies to OpenSuse 13.2 but maybe also to other Linux's. The standard installation of Dovecot (especially 10-ssl.conf) places the certificate dovecot.pem in /etc/ssl/certs. Sometimes during updates does OpenSuse renew all certificates in /etc/ssl/certs and erases dovecot.pem. This blocks further access to the mailbox. I found a

Hi list, I'm looking for a function or a combination of functions to do panel plotting of mixed graph types with the same x axis. I would like to construct a panel with 3 stacked windows with on top a histogram, below that 2 cdf plots. They all have the same x axis value but different y axis values. Is it possible to construct something like that? I've looked into the lattice package

Hi all, I was quite succesfully working with the RODB package on a 32 bit linux box to connect to a MSSQL Server via the freeTSL driver. After changing to a 64 bit environment I ran into some segmentation faults using function sqlUpdate on large database operations (the actual seg faults occured in the call to the C function ODBCUpdate). I just briefly looked into the code and found some extensive

Hello, I am exporting a graph in "gml" format from igraph 0.5.5. When I open the file in Cytoscape v.2.7 I can't map the color attribute that I assign to the graph when I export it from igraph. Could anyone help me in this? Thanks. -- Warm Regards, Sandeep Amberkar BioQuant,BQ26, Im Neuenheimer Feld 267, D-69120,Heidelberg Tel: +49-6221-5451354 [[alternative HTML version

Dear list, I've been messing around with coding functions in R and it just won't make sense to me. Running my analysis by hand on command line is fine and works but because of the repetitive nature of the job I would like to code a function for it. My problem: I would like to read in data from a file in my current working dir. so my code would look like: myanalysis <-

Hi list, I would like to normalize a matrix (two actually for comparison) using iterative proportional fitting. Using ipf() would be the easiest way to do this, however I can't get my head around the use of the function. More specifically, the margins settings... for a matrix: mat <- matrix(c(65,4,22,24,6,81,5,8,0,11,85,19,4,7,3,90),4,4) using fit <-

Hello, I''m running a SLES10 SP1 Server as a Dom0 and as DomU. I have allocated 1024 Mb RAM to the DomU and one virtual processor (physical processor is a dual core Intel Xeon 3.4 Ghz). A warning is regularly displayed on the standard output : INIT: Id "x0" respawning too fast: disabled for 5 minutes Any idea where that come from ? Thanks in advance. Hervé Marcy

Hi list, I'm working on time series of (bio)physical data explaining (or not) the net ecosystem exchange of a system (+_ CO2 in versus CO2 out balance). I decomposed the time series of the various explaining variable according to scale (wavelet decomposition). With the coefficients I got from the wavelet decomposition I applied a (multiple) regression, giving some expected results. The net

hello, I have the following problem setting parameter 'frac' in the sigest function of the kernlab package. ## executing the ?sigest example: library(kernlab) data(spam) srange <- sigest(type~.,data = spam) ## works fine... ## setting 'frac' explicitly ## (in this case even to the default of .25) options(error=recover) srange <- sigest(type~.,data = spam, frac = .25) ##

Hi list, Is there a package that covers the evaluation of spatial statistics on images and not on point data? I've converted an image matrix to x, y coordinates and a measurement value but evaluation with the package spdep (not really designed for image data I suppose) is unworkable. Any suggestions? Regards, Koen

Hi list, I have a little curve fitting problem. I would like to fit a sigmoid curve to my data using the following equation: f(x) = 1/(1 + exp(-(x-c)*b)) (or any other form for that matter) Where x is the distance/location within the dataframe, c is the shift of the curve across the dataframe and b is the steepness of the curve. I've been playing with glm() and glm.fit() but without

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Hi, I wish to compute multivariate test statistics for a within-subjects repeated measures design with anova.mlm. This works great if I only have two factors, but I don't know how to compute interactions with more than two factors. I suspect, I have to create a new "grouping" factor and then test with this factor to get these interactions (as it is hinted in R News 2007/2), but

I am trying to install samba 3.0.0 and getting below error when try to run ./configure… Please advise. Thanks. #pwd /usr/local/src/samba/3.0.0/source <<<<<<<<<<<<Is this correct place to run .configure ? # ./configure checking for gcc…..no checking for cc……no checking for cc……no checking for c1…….no configuration errror : no acceptable c compiler found in

Hi, I have to install CentOS on a spare partition of a laptop with Windows pre installed. Is there anything I have to watch out for? Couldn't find anything in the wiki or does the installer handle this well without me doing some magic, or so? TIA, Frank.

I've written a piece of code (see below) to do a wavelet image decomposition, during the evaluation of this code I would like to write the results of some calculations back to the R root directory. I used assign() to do so because the names should vary when going thrue a while() loop. For some unknown reason I get an error that says: Error in assign(varname[i], imwrImage) :

Hi, I compiled openssh 2.1.1p1 on Irix 6.2 with MIPS 7.2.1.2m compiler. All works fine except the yppasswd command from Irix (it's no NIS-problem, same with rlogin works): Logged in with 'ssh machine -l user1' # who user1 ttyq0 Jun 19 15:17 (xxxxx.iwr.uni-heidelberg.de) # ypcat passwd |grep user1 user1:xxxxxxxxxxxxx:1535:1500:User1:/usr/people/user1:/bin/tcsh # ypcat passwd |grep