similar to: Simple Nesting question/Odd error message

Displaying 20 results from an estimated 3000 matches similar to: "Simple Nesting question/Odd error message"

2005 Nov 01
1
R Graphs in Powerpoint
I've tried several methods in OS X, and here's what works best for me. Save the R graphic as a PDF file. Open it with Apple's "Preview" application, and save it as a PNG file. The resulting .png file can be inserted into MS Word or PowerPoint, can be resized, and looks good on either OS X or Windows. There are other programs available for translating the pdf file to png
2005 Nov 08
2
A Quick and (Very) Dirty Intro to Stats in R
Greetings to all, First off, I want to thank you all for answering any nagging questions I've had over the past few days. I've been in the process of putting together A Quick and (Very) Dirty Intro to Doing Your Statistics in R (which I have posted to http://didemnid.ucdavis.edu/rtutorial.html ) in order to teach an R workshop for the graduate students in my department. This is a
2005 Nov 15
1
Repeates Measures MANOVA for Time*Treatment Interactions
Dear R folk, First off I want to thank those of you who responded with comments for my R quick and dirty stats tutorial. They've been quite helpful, and I'm in the process of revising them. When it comes to repeated measures MANOVA, I'm in a bit of a bind, however. I'm beginning to see that all of the documentation is written for psychologists, who have a slightly
2009 Jun 15
1
altering a global variable
I'm working on a program that loads several large data files. I'm using ddply (plyr is really awesome) but I want to minimize the amount of times a large data file is read in. One solution is to keep track of which data file is open with a global variable and then change the currently open data file globally as needed. However, I'm unclear on how to alter a global variable
2007 Feb 13
4
Advice on visual graph packages
Hey, all. I'm looking for packages that are good at two things 1) Drawing directed graphs (i.e nodes and edges), both with single and double headed arrows, as well as allowing for differences in line width and solid versus dashed. Note: I've tried Rgraphviz here, but have run into some problems (which seem fixable and I may go with it in the end), and it doesn't satisfy need
2008 Apr 15
2
glht with a glm using a Gamma distribution
Quick question about the usage of glht. I'm working with a data set from an experiment where the response is bounded at 0 whose variance increases with the mean, and is continuous. A Gamma error distribution with a log link seemed like the logical choice, and so I've modeled it as such. However, when I use glht to look for differences between groups, I get significant
2006 Nov 28
3
comments in scan
I had a question about scan in R. For better code readability, I would like to have lines in the block of data to be scanned that are commented - not just lines that have a comment at the end. For example #age, weight, height 33,128,65 34,56,155 instead of having to do something like 33,128,65 #age, weight, height 34,56,155 Is this at all possible?
2005 Oct 25
1
Ryan's Q Post-Hoc for ANOVA
I'm using lm to run an ANOVA, and would like to use Ryan's Q as my post-hoc (as recommended by Day and Quinn, 1989, Ecological Monographs). I can't seem to find any methods in the base stats package that implement this post-hoc. Is there a good package of post-hoc methods out there, or has someone written a method for Ryan's Q previously? Thanks! -Jarrett
2010 Feb 16
1
suppress printing within a function
I'm working with a few functions (e.g. do.base.descriptions in the netstat package) that, in addition to returning an object with variables I want to extract, also print output. There is no way to turn this default printing behavior off in many of the functions. Is there a blanket way to suppress such printing, say, within a loop or a ddply statement? Thanks! -Jarrett
2010 Aug 11
2
a question regarding updating formulas with coefficients
I have formulae with coefficents that I would like to update. However, I get some strange results. For example, see the following: For the formula y ~ d+ 3*r+t I want to add a variable p, so > update(y~d+0*r+t, .~.+p) produces y ~ d + t + p - 1 If the coefficient is not 0, but rather, something else - say, 3, I get the following: > update(y~d+3*r+t, .~.+p) Error in
2008 May 06
1
question about se of predicted glm values
Hey, all. I had a quick question about fitting new glm values and then looking at the error around them. I'm working with a glm using a Gamma distribution and a log link with two types of treatments. However, when I then look at the predicted values for each category, I find for the one that is close to 0, the error (using se.fit=T with predicted) actually makes it overlap 0.
2008 Feb 04
1
extracting AIC scores from lmer and other objects
I have a slight conundrum. I'm attempting to write a scrip that will take a number of objects (lm, glm, and lmer) and return AIC scores and weights. I've run into 3 problems, and was wondering if anyone had any pointers. 1) is there any convenient way to extract the name of the objects? Simply, if I have a vector of objects c(my.lm, my.lmer) and I want to get a character
2012 Sep 07
2
metafor package: study level variation
Hello. A quick question about incorporating variation due to study in the metafor package. I'm working with a particular data set for meta-analysis where some studies have multiple measurements. Others do not. So, let's say the effect I'm looking at is response to two different kinds of drug treatment - let's call their effect sizes T1 and T2. Some studies have multiple
2006 Sep 13
1
Updating lmer - object is not subsettable?
I'm attempting to write a general function to implement Faraway's bootstrapping algorithm for mixed models with lmer, but have run into a curious problem. I'm comparing two models model.1<-lmer(Response ~ Treatment + (1|Trial), data=exp.data, method="ML") model.2<-lmer(Response ~ 1 + (1|Trial), data=exp.data, method="ML") When I attempt to update
2009 Apr 29
1
Hierarchical Diagram of Networks in sna or otherwise?
I've been using sna to work with some networks, and am trying to visualize them easily. My networks are hierarchical (food webs). All of the layout engines I've tried with gplot don't seem to plot hierarchical networks, as one would using dot from graphviz. While I could do all of this by outputting to dotfiles and running it through graphviz, the graphics I get from R are much
2018 Aug 09
2
[PATCH 0/2] Fix display detection issues with P50-P52 docks
This fixes some annoying issues on the P50-P52 with displays not being detected if they aren't plugged in at boot, and sometimes even when they are plugged in at boot. See: https://bugzilla.redhat.com/show_bug.cgi?id=1477182 Lyude Paul (2): drm/nouveau: Only write DP_MSTM_CTRL when needed drm/nouveau: Reset MST branching unit before enabling drivers/gpu/drm/nouveau/dispnv50/disp.c | 65
2009 Aug 05
2
using ddply but preserving some of the outside data
I have a bit of a quandy. I'm working with a data set for which I have sampled sites at a variety of dates. I want to use this data, and get a running average of the sampled values for the current and previous date. I originally thought something like ddply would be ideal for this, however, I cannot break up my data by date, and then apply a function that requires information
2013 Jun 07
1
Function nlme::lme in Ubuntu (but not Win or OS X): "Non-positive definite approximate variance-covariance"
Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04ΒΈ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite
2018 Sep 18
1
Centos7/Kde4 freeze
Hi I have a fresh install of centos 7.4 with KDE on a laptop (latitude 5590) connected to a DELL WD15 dockstation with an additionnal screen. It works quite well, I have 2 screens side by side (default config), but.... If I add a second menu bar for the screen connected to the dockstation (KDE allow for this) it is not possible anymore to start a kde session if the laptop is not connected to
2010 Aug 12
1
multicore mclapply error
I'm running r 2. on a mac running 10.6.4 and a dual-core macbook pro. I'm having a funny time with multicore. When I run it with 2 cores, mclapply, R borks with the following error. The process has forked and you cannot use this CoreFoundation functionality safely. You MUST exec(). Break on __THE_PROCESS_HAS_FORKED_AND_YOU_CANNOT_USE_THIS_COREFOUNDATION_FUNCTIONALITY___YOU_MUST_EXEC__()