similar to: order of panels in xyplot

Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr)Loading required package: imputeLoading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from ?package:Biobase?: ? ? anyMissing, rowMedians Warning messages:1: package ?samr? was

Sorry forgot to use plain text format, hope this time it works: Hi, I am trying to using SAMseq() to analyze my RNA-seq experiment (20000 genes x 550 samples) with survival endpoint. It quickly give the following error: > library(samr) Loading required package: impute Loading required package: matrixStats Attaching package: ?matrixStats? The following objects are masked from

Hi, I'm creating some lattice plots that have a key and I'd like to put a label on the key. The problem is that the text label for the key prevents the values of the group variables from being shown (see example below). I don't think that this is a feature, but I might be abusing the title arg for key. I'm using R Version 2.3.0 (2006-04-24) on Windows XP and lattice V0.13-8

The Lattice auto.key argument has a bug in R.12.2. R version 2.12.2 (2011-02-25) Platform: i386-pc-mingw32/i386 (32-bit) .... other attached packages: [1] lattice_0.19-17 loaded via a namespace (and not attached): [1] grid_2.12.2 If I set up my plot parameters as require(lattice) superpose.line.settings <- trellis.par.get("superpose.line") str(superpose.line.settings)

In running R CMD check I get an error I can't debug. Would someone please let me know if they spot a syntax error in the code below or if there is a workaround for the parse error? Thanks -Frank Error in parse(file, n, text, prompt) : parse error Error in codoc(package = "Hmisc") : cannot source usages in documentation object 'plsmo' Execution halted * checking for

Win2k, R1.7.1: I am currently working with some growth curve data from a biotoxicology experiment. Each of 12 subjects had their blood drawn at 0, 2, 4, 6, 8, and 10 weeks. For the purposes of the project, it would be helpful if I were able to do the following: a. Produce 12 panels, each displaying the *same* data, with the "strip" at the top of a particular panel showing

Hello, I am trying to select the following headers from a data frame but when I try and run the command it executes halfway through and give me an error at V188 and V359. Temp <- data.frame(V4, V5, V6, V7, V8, V9, V10, V11, V12, V13, V14, V15, V16, V17, V18, V19, V20, V21, V22, V23, V24, V25, V26, V27, V28, V29, V30, V31, V32, V33, V34, V35, V36, V37, V38, V39, V40, V41, V42, V43, V44, V45,

Hi All, I am trying to understand panel functions. Let's use this example. library(lattice) time<-c(rep(1:10,5)) y <-time+rnorm(50,5,2) group<-c(rep('A',30),rep('B',20)) subject<-c(rep('a',10),rep('b',10),rep('c',10),rep('d',10),rep('e',10)) myData <-data.frame(subject,group,time,y) head(myData) Plot 1 xyplot(y ~ time

Dear R-helpers, the problem I'm facing today is to convince lattice to paint some areas in gray. The areas I would like to have in gray, are confidence bands I've googled around in the mailing list archives and eventually find some clues. This link is my starting point http://tolstoy.newcastle.edu.au/R/e2/help/07/04/15595.html I'm reproducing here the code for your convenience est

Hi, I have just started using lattice and it looks great. But I already have 3 questions about xyplot display. ---------------------------------------------------------------------------- --------------------------------- 1.I would like to create two differeny xyplot with different color to identify my different groups but I have trouble applying colors. Here are the scripts

Dear R Users, I have an xyplot() where different plotting symbols are used for subgroups (originally used within S-Plus, but hopefully it?s also applicable to R users). How can I fit separate regression lines for every subgroup? So far, I can only plot the overall fitted line. The code looks like this: trellis.device() sps<-trellis.par.get("superpose.symbol") sps$pch<-1:7

Hi all, I'm having a problem with the auto.key function in xyplot. I changed the symbols an lines styles using these commands trellis.par.set(superpose.symbol=list(pch=c(0,1,2,3,4,5,6,8,15,16))) trellis.par.set(superpose.symbol=list(col=c(rep("black",11)))) trellis.par.set(superpose.symbol=list(cex=c(rep(0.6,11))))

Hi enthusiasts, Trying to create a single chart in lattice with different plotting definitions for the different series (two series should be drawn with lines and the other without them) I am using a dataset, which includes a grouping variable e.g. clinic with three levels, the variable "year" and a continous variable: "mct". In the graph the variable "year" is in

Dear R group, Tried to turn off the html in yahoo.  So far  not successful.  Apologies! I tried to get xyplot shrink fit for my mixed model.  But, the mixed model line is not seen in the graph. I would like to know if there is anything wrong with my code. Thanks, A.K. (fm1 <- lmer(Response3 ~1+ Wavelength*Start_Resp*time + (1|resid) + (1+time|Subject_BDat), family=binomial, data=Behavdat,

Hi everyone, I am trying to change some of the default colors in a multipanel-multigroup lattice graphic, but when I change the panel color to white, the only group that is plotted is the last one, as panel.fill overwrites all the previous ones. Is there any way to set the panel background color for the first panel to a color and keep the rest transparent? My code looks like this: #first set

Full_Name: Volker Franz Version: 1.5.1 OS: Debian-Linux Submission from: (NULL) (134.176.77.64) Hi, working with the panel.superpose function, I found out that this function does not pass the subscripts and groups arguments to panel.groups functions. In my view, this seems an unnecessary restriction, because the subscripts-mechanism which allows to access the original data should also work if

Dear R-list, I would like to use the lattice library to show several groups on the same graph. Here's my example : ## the data f1 <- factor(c("mod1","mod2","mod3"),levels=c("mod1","mod2","mod3")) f1 <- rep(f1,3) f2 <-

With some help from those with expertise on this list, I managed to produce a plot using trellis that looked like I wanted it to look. Now, I need to take the same plot and make the lines on it color, but I want to specify the color for the lines myself. I've managed to make the key use the colors I want. I've managed to make the symbols of the actual plot use the colors I want. But I

R Friends, I'm running R2.7.1 on Windows XP. I'm trying to get some lattice functionality which I have not seen previously documented--I'd like to plot the exact same data in multiple panels but changing the grouping variable each time so that each panel highlights a different feature of the data set. The following code does exactly that with a simple and fabricated air quality data

Hi, I'd like to plot 4 groups of data using xyplot and panel.superpose so that the points are overlayed on a single plot. For each group of data I'd also like a loess smoothed function (using panel.loess). I have tried the following: xyplot(series ~ time | gr, data=etable, panel = function(x,y, ...) { panel.superpose(x,y, ...) panel.loess(x,y,span=.15)