similar to: (no subject)

Displaying 20 results from an estimated 500 matches similar to: "(no subject)"

2005 Jul 20
0
writing matrices (no subject)
Simply gooling for "writing ARFF file in R" gave the following as first hit, which is right on the WEKA page: Miscellaneous code [...] Function for reading ARFF files into the R statistical package (kindly provided by Dr Craig Struble). Function for writing ARFF files from the R statistical package (kindly provided by Nigel Sim).
2004 Jul 11
1
R + OS X + gcc 3.5 = not quite there ..
I tried to compile R (current R-patched to be more precise) with gcc 3.5 by Apple (which will be probably shipped with Tiger) and here's how far I got: 1) compilation itself was fine except for one exception: ../../../../../../R-patched/src/library/stats/src/starma.c: In function `forkal': ../../../../../../R-patched/src/library/stats/src/starma.c:384: error: invalid lvalue in
2006 Jan 17
2
Installing a package yet it will not work.
I want R to read my Microsoft Access database or maybe even a Sybase database. I installed RODBC or at least thought I did. Then I issued the following command: library(RODBC) And got Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning message: package 'RODBC' was built under R version 2.3.0 Error: package/namespace
2008 Jul 01
2
Problem with loading library-ks
Hi, I am trying to load the library(ks), but I am getting the following error: Loading required package: KernSmooth KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: mvtnorm Loading required package: rgl Loading required package: misc3d Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning messages: 1:
2004 Oct 26
1
Error in lazyLoadDBfetch
Hello, what does the following error mean?? It occured during or at the end of a lengthy (and memory-intensive) calculation using a routine from a shared library called via the '.C' function: Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : recursive default argument reference I could not find any help with help.search("lazyLoadDBfetch") Im using R
2006 Jan 12
4
CRAN versions of lme4/Matrix don't appear to work with R 2.1.1
I am currently using R 2.1.1 under Windows and I do not seem to be able to load the current versions of lme4/Matrix. I have run 'update.packages.' I understand this is still experimental software but I would like access to a working version. Thanks. Chuck R Output: > library(lme4) Loading required package: Matrix Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
2004 Feb 18
1
R would not quit (bug?) (PR#6600)
Hello. I am not sure if this is a bug. I loaded into R a very large matrix, around 600,000 X 30 integers. My machine has 2G ram. After trying to write.table a modification of this matrix, R generated some sort of malloc error. Then, Error: vector memory exhausted (limit reached?) > q() Save workspace image? [y/n/c]: n *** malloc: vm_allocate(size=8421376) failed (error code=3) ***
2005 Oct 16
1
Error in lazyLoadDBfetch
R was working fine for a while. However, now after I get some data from the web and try to "write", "write.table" or "save.image", I get this error: Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : file open failed I may have downloaded additional packages in between the time it worked, and now when it doesn't work, but other than that I cannot
2005 Jul 19
1
mac os x crashes with bioconductor microarray code (PR#8013)
Full_Name: Eric Libby Version: 2.1.1 OS: OS Tiger Submission from: (NULL) (65.93.158.117) I am trying to analyze microarray data of 42 human arrays. I typed in the following instructions: library(affy) Data <-ReadAffy() eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE, pmcorrect.method="pmonly",summary.method="liwong") And I get some
2005 Nov 30
1
library(its) problem
Dear R People: I wanted to use the package "its" this afternoon. I'm using R Version 2.2.0 for Windows. I was able to install the package, but ran into trouble at the "library" command. Here is the output: > library(its) Loading required package: Hmisc Hmisc library by Frank E Harrell Jr Type library(help='Hmisc'), ?Overview, or ?Hmisc.Overview') to see
2006 Aug 07
1
failed to load gplots
Hi everyone! I get the following message anyhow I try to load the package gplots: Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 Error in library(pkg, character.only = TRUE) : package/namespace load failed for 'gplots' Could any of you tell me what goes wrong? (I am using R 2.0.1. on Windows) Thanks a lot: ----------
2006 Nov 22
1
problem with the plm package
Hi all, I have a problem in installing and using the plm package using R 2.2.0 on windows xp. I installed it from a .zip file downloaded from the CRAN. Apparently everything is ok: > utils:::menuInstallLocal() package 'plm' successfully unpacked and MD5 sums checked updating HTML package descriptions However, when I try to load it: > library(plm) Errore in lazyLoadDBfetch(key,
2006 Mar 08
1
malloc: vm_allocate(size=381886464) failed (error code=3)
Hi all, I am having memory allocation problem with my R 2.2.1 for Mac OS. The following is the error message that I get. I do not get this message if I break down the large dataset in to sub datasets. I think breaking up the dataset is not a sustainable solution in the long run. The data that I am analysing is essentially big, and it would be reasonable to do the analyis on the whole dataset
2006 Jun 06
1
Ampersand Crashes Ruby
I''m using acts_as_ferret and when I call Object.find_by_contents("A & B"), Ruby dies with the following message: ^Cruby(5014,0xa000cf60) malloc: *** vm_allocate(size=1069056) failed (error code=3) ruby(5014,0xa000cf60) malloc: *** error: can''t allocate region ruby(5014,0xa000cf60) malloc: *** set a breakpoint in szone_error to debug ruby(5014,0xa000cf60) malloc:
2006 Jul 18
1
possibly stupid question about RPM building
I'm trying to build an RPM of R 2.3.1 on a very old RedHat system (specifically, a ROCKS 3.3.0 cluster which is built on RH enterprise 3 (I think??)) I downloaded R-2.3.1.tgz from CRAN; downloaded the R.spec file cran.r-project.org/http://cran.r-project.org/bin/linux/redhat/SRPMS/ ; and ran rpmbuild -ba R.specs. Everything goes along fine until ... make[5]: Entering directory
2005 Nov 13
1
Memory allocation (PR#8304)
Full_Name: Hans Kestler Version: 2.2.0 OS: 10.4.3 Submission from: (NULL) (84.156.184.101) > sam1.out<-sam(raw1[,2:23],raw1.cl,B=0,rand=124) We're doing 319770 complete permutations Error: cannot allocate vector of size 575586 Kb R(572,0xa000ed68) malloc: *** vm_allocate(size=589402112) failed (error code=3) R(572,0xa000ed68) malloc: *** error: can't allocate region
2008 Jan 10
1
OS X binary: 32 or 64-bit?
Dear R Experts, I am using R.app (the Mac OS X binary) for neuroimage analysis, so I am loading in some large image files. I get the following error in the middle of my script: > source("3dLME.R") Read 1 record Read 1 record Read 1 record Read 1 record Read 1 record Error: cannot allocate vector of size 3.1 Gb R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed (error
2008 Mar 21
1
Memory Problem
Dear all, I am having a memory problem when analyzing a rather large data set with nested factors in R. The model is of the form X~A*B*(C/D/F) A,B,C,D,F being the independent variables some of which are nested. The problem occurs when using aov but also when using glm or lme. In particular I get the following response, Error: cannot allocate vector of size 1.6 Gb R(311,0xa000d000) malloc: ***
2006 Feb 01
2
memory limit in aov
I want to do an unbalanced anova on 272,992 observations with 405 factors including 2-way interactions between 1 of these factors and the other 404. After fitting only 11 factors and their interactions I get error messages like: Error: cannot allocate vector of size 1433066 Kb R(365,0xa000ed68) malloc: *** vm_allocate(size=1467461632) failed (error code=3) R(365,0xa000ed68) malloc: ***
2007 Aug 24
2
problem loading package 'gplots'
Dear R community, I am using R version 2.4.1 GUI 1.18 on an iBook G4 with OS 10.4.10. When I try to load package 'gplots' I get the following message: > library(gplots) Loading required package: gdata Attaching package: 'gdata' The following object(s) are masked _by_ .GlobalEnv : reorder.factor Loading required package: gtools Attaching package: 'gtools'