Displaying 20 results from an estimated 500 matches similar to: "(no subject)"
2005 Jul 20
0
writing matrices (no subject)
Simply gooling for "writing ARFF file in R" gave the following as first hit,
which is right on the WEKA page:
Miscellaneous code
[...]
Function for reading ARFF files into the R statistical package (kindly
provided by Dr Craig Struble).
Function for writing ARFF files from the R statistical package (kindly
provided by Nigel Sim).
2004 Jul 11
1
R + OS X + gcc 3.5 = not quite there ..
I tried to compile R (current R-patched to be more precise) with gcc
3.5 by Apple (which will be probably shipped with Tiger) and here's how
far I got:
1) compilation itself was fine except for one exception:
../../../../../../R-patched/src/library/stats/src/starma.c: In function
`forkal':
../../../../../../R-patched/src/library/stats/src/starma.c:384: error:
invalid lvalue in
2006 Jan 17
2
Installing a package yet it will not work.
I want R to read my Microsoft Access database or maybe even a Sybase
database. I installed RODBC or at least thought I did. Then I issued the
following command:
library(RODBC)
And got
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
ReadItem: unknown type 241
In addition: Warning message:
package 'RODBC' was built under R version 2.3.0
Error: package/namespace
2008 Jul 01
2
Problem with loading library-ks
Hi,
I am trying to load the library(ks), but I am getting the following error:
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: mvtnorm
Loading required package: rgl
Loading required package: misc3d
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
ReadItem: unknown type 241
In addition: Warning messages:
1:
2004 Oct 26
1
Error in lazyLoadDBfetch
Hello,
what does the following error mean??
It occured during or at the end of a lengthy (and memory-intensive)
calculation using a routine from a shared library called via the '.C'
function:
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
recursive default argument reference
I could not find any help with help.search("lazyLoadDBfetch")
Im using R
2006 Jan 12
4
CRAN versions of lme4/Matrix don't appear to work with R 2.1.1
I am currently using R 2.1.1 under Windows and I do not seem to be able
to load the current versions of lme4/Matrix. I have run
'update.packages.' I understand this is still experimental software but
I would like access to a working version.
Thanks.
Chuck
R Output:
> library(lme4)
Loading required package: Matrix
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
2004 Feb 18
1
R would not quit (bug?) (PR#6600)
Hello.
I am not sure if this is a bug.
I loaded into R a very large matrix, around 600,000 X 30 integers. My
machine has 2G ram.
After trying to write.table a modification of this matrix, R generated
some sort of malloc error.
Then,
Error: vector memory exhausted (limit reached?)
> q()
Save workspace image? [y/n/c]: n
*** malloc: vm_allocate(size=8421376) failed (error code=3)
***
2005 Oct 16
1
Error in lazyLoadDBfetch
R was working fine for a while. However, now after I get some data from the
web and try to "write", "write.table" or "save.image", I get this error:
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : file open
failed
I may have downloaded additional packages in between the time it worked, and
now when it doesn't work, but other than that I cannot
2005 Jul 19
1
mac os x crashes with bioconductor microarray code (PR#8013)
Full_Name: Eric Libby
Version: 2.1.1
OS: OS Tiger
Submission from: (NULL) (65.93.158.117)
I am trying to analyze microarray data of 42 human arrays. I typed in the
following instructions:
library(affy)
Data <-ReadAffy()
eset <- expresso(Data, normalize.method="invariantset", bg.correct=FALSE,
pmcorrect.method="pmonly",summary.method="liwong")
And I get some
2005 Nov 30
1
library(its) problem
Dear R People:
I wanted to use the package "its" this afternoon.
I'm using R Version 2.2.0 for Windows.
I was able to install the package, but ran into trouble at
the "library" command. Here is the output:
> library(its)
Loading required package: Hmisc
Hmisc library by Frank E Harrell Jr
Type library(help='Hmisc'), ?Overview, or ?Hmisc.Overview')
to see
2006 Aug 07
1
failed to load gplots
Hi everyone!
I get the following message anyhow I try to load the package gplots:
Error in lazyLoadDBfetch(key, datafile, compressed, envhook) :
ReadItem: unknown type 241
Error in library(pkg, character.only = TRUE) :
package/namespace load failed for 'gplots'
Could any of you tell me what goes wrong? (I am using R 2.0.1. on Windows)
Thanks a lot:
----------
2006 Nov 22
1
problem with the plm package
Hi all,
I have a problem in installing and using the plm
package using R 2.2.0 on windows xp.
I installed it from a .zip file downloaded from
the CRAN. Apparently everything is ok:
> utils:::menuInstallLocal()
package 'plm' successfully unpacked and MD5 sums checked
updating HTML package descriptions
However, when I try to load it:
> library(plm)
Errore in lazyLoadDBfetch(key,
2006 Mar 08
1
malloc: vm_allocate(size=381886464) failed (error code=3)
Hi all,
I am having memory allocation problem with my R 2.2.1 for Mac OS. The
following is the error message that I get. I do not get this message if I
break down the large dataset in to sub datasets. I think breaking up the
dataset is not a sustainable solution in the long run. The data that I am
analysing is essentially big, and it would be reasonable to do the analyis
on the whole dataset
2006 Jun 06
1
Ampersand Crashes Ruby
I''m using acts_as_ferret and when I call Object.find_by_contents("A &
B"), Ruby dies with the following message:
^Cruby(5014,0xa000cf60) malloc: *** vm_allocate(size=1069056) failed
(error code=3)
ruby(5014,0xa000cf60) malloc: *** error: can''t allocate region
ruby(5014,0xa000cf60) malloc: *** set a breakpoint in szone_error to
debug
ruby(5014,0xa000cf60) malloc:
2006 Jul 18
1
possibly stupid question about RPM building
I'm trying to build an RPM of R 2.3.1 on a very old RedHat system
(specifically, a ROCKS 3.3.0 cluster which is built on RH enterprise
3 (I think??))
I downloaded R-2.3.1.tgz from CRAN; downloaded the R.spec file
cran.r-project.org/http://cran.r-project.org/bin/linux/redhat/SRPMS/ ;
and ran rpmbuild -ba R.specs.
Everything goes along fine until ...
make[5]: Entering directory
2005 Nov 13
1
Memory allocation (PR#8304)
Full_Name: Hans Kestler
Version: 2.2.0
OS: 10.4.3
Submission from: (NULL) (84.156.184.101)
> sam1.out<-sam(raw1[,2:23],raw1.cl,B=0,rand=124)
We're doing 319770 complete permutations
Error: cannot allocate vector of size 575586 Kb
R(572,0xa000ed68) malloc: *** vm_allocate(size=589402112) failed (error code=3)
R(572,0xa000ed68) malloc: *** error: can't allocate region
2008 Jan 10
1
OS X binary: 32 or 64-bit?
Dear R Experts,
I am using R.app (the Mac OS X binary) for neuroimage analysis, so I
am loading in some large image files. I get the following error in the
middle of my script:
> source("3dLME.R")
Read 1 record
Read 1 record
Read 1 record
Read 1 record
Read 1 record
Error: cannot allocate vector of size 3.1 Gb
R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed
(error
2008 Mar 21
1
Memory Problem
Dear all,
I am having a memory problem when analyzing a rather large data set with
nested factors in R.
The model is of the form X~A*B*(C/D/F) A,B,C,D,F being the independent
variables some of which are nested.
The problem occurs when using aov but also when using glm or lme.
In particular I get the following response,
Error: cannot allocate vector of size 1.6 Gb
R(311,0xa000d000) malloc: ***
2006 Feb 01
2
memory limit in aov
I want to do an unbalanced anova on 272,992 observations with 405
factors including 2-way interactions between 1 of these factors and
the other 404. After fitting only 11 factors and their interactions I
get error messages like:
Error: cannot allocate vector of size 1433066 Kb
R(365,0xa000ed68) malloc: *** vm_allocate(size=1467461632) failed
(error code=3)
R(365,0xa000ed68) malloc: ***
2007 Aug 24
2
problem loading package 'gplots'
Dear R community,
I am using R version 2.4.1 GUI 1.18 on an iBook G4 with OS 10.4.10.
When I try to load package 'gplots' I get the following message:
> library(gplots)
Loading required package: gdata
Attaching package: 'gdata'
The following object(s) are masked _by_ .GlobalEnv :
reorder.factor
Loading required package: gtools
Attaching package: 'gtools'