Displaying 20 results from an estimated 6000 matches similar to: "PLS: problem transforming scores to variable space"
2005 Oct 11
0
pls version 1.1-0
Version 1.1-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2005 Oct 11
0
pls version 1.1-0
Version 1.1-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2007 Oct 26
0
pls version 2.1-0
Version 2.1-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls, wide kernel
pls, and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and
2007 Oct 26
0
pls version 2.1-0
Version 2.1-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls, wide kernel
pls, and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and
2005 May 12
1
pls -- crossval vs plsr(..., CV=TRUE)
Hi,
Newbie question about the pls package.
Setup:
Mac OS 10.3.9
R: Aqua GUI 1.01, v 2.0.1
I want to get R^2 and Q^2 (LOO and Leave-10-Out) values for each
component for my model.
I was running into a few problems so I played with the example a little
and the results do not match up with the comments
in the help pages.
$ library(pls)
$ data(NIR)
$ testing.plsNOCV <- plsr(y ~ X, 6, data =
2008 Dec 19
0
How to plot arrows for a PLS plot with ggplot2?
Dear community,
I'd like to build a PLS plot with scores and loadings, sometimes
called "biplot". Like in biplot.mvr {pls} but using ggplot2.
1. Scores plot. No problem!
ggplot(data=data1,aes(x=plsr1,y=plsr2))+geom_point(aes(colour=solenergy,shape=type))+geom_text(aes(label=res,size=1,hjust=0,vjust=0))
where,
> str(data1)
'data.frame': 295 obs. of 5 variables:
$
2008 Oct 20
1
Calculate SPE in PLS package
Dear list,
I want to calculate SPE (squared prediction error) in x-space, can
someone help?
Here are my codes:
fit.pls<-
plsr(Y~X,data=DAT,ncomp=3,scale=T,method='oscorespls',validation="CV",x=
T)
actual<-fit.pls$model$X
pred<-fit.pls$scores %*% t(fit.pls$loadings)
SPE.x<-rowSums((actual-pred)^2)
Am I missing something here?
Thanks in advance.
Stella Sim
2012 Dec 05
1
In factor analysis in the psych package, how can I work out which factors the columns in $scores relate to? How do I know what each of the scores is scoring?
Hi
I have used fa() to perform a factor analysis of a psychological battery which is thought to have 11 factors. I can identify which factors the loadings relate to easily enough because I can see which items are loading onto each of the columns in the $loading output. However, how can I identify which items or loadings are being used to create each of the columns in the $scores output? I have
2009 Oct 01
0
Confidence intervals PLS prediction
I have switched from The Unscrambler to R for pls regression analysis and
have been able to calculate scores, coefficients, RMSEP from a large number
of PLS1 and PLS2 models. The ultimate goal is to use these models for
predicting unknown samples, which again is straight-forward with the
built-in predict() function. However, I?m struggling with prediction
uncertainty (i.e. confidence intervals) on
2007 Jan 02
0
pls version 2.0-0
Version 2.0-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2007 Jan 02
0
pls version 2.0-0
Version 2.0-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2010 Nov 30
3
pca analysis: extract rotated scores?
Dear all
I'm unable to find an example of extracting the rotated scores of a
principal components analysis. I can do this easily for the un-rotated
version.
data(mtcars)
.PC <- princomp(~am+carb+cyl+disp+drat+gear+hp+mpg, cor=TRUE, data=mtcars)
unclass(loadings(.PC)) # component loadings
summary(.PC) # proportions of variance
mtcars$PC1 <- .PC$scores[,1] # extract un-rotated scores of
2006 Feb 23
0
pls version 1.2-0
Version 1.2-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2006 Feb 23
0
pls version 1.2-0
Version 1.2-0 of the pls package is now available on CRAN.
The pls package implements partial least squares regression (PLSR) and
principal component regression (PCR). Features of the package include
- Several plsr algorithms: orthogonal scores, kernel pls and simpls
- Flexible cross-validation
- A formula interface, with traditional methods like predict, coef,
plot and summary
- Functions
2007 Feb 13
1
Questions about results from PCAproj for robust principal component analysis
Hi.
I have been looking at the PCAproj function in package pcaPP (R 2.4.1) for
robust principal components, and I'm trying to interpret the results. I
started with a data matrix of dimensions RxC (R is the number of rows /
observations, C the number of columns / variables). PCAproj returns a list
of class princomp, similar to the output of the function princomp. In a
case where I can
2006 Apr 27
0
pls package: bugfix release 1.2-1
Version 1.2-1 of the pls package is now available on CRAN.
This is mainly a bugfix-release. If you fit multi-response models,
you are strongly engouraged to upgrade!
The main changes since 1.2-0 are
- Fixed bug in kernelpls.fit() that resulted in incorrect results when fitting
mulitresponse models with fewer responses than predictors
- Changed default radii in corrplot()
- It is now
2006 Apr 27
0
pls package: bugfix release 1.2-1
Version 1.2-1 of the pls package is now available on CRAN.
This is mainly a bugfix-release. If you fit multi-response models,
you are strongly engouraged to upgrade!
The main changes since 1.2-0 are
- Fixed bug in kernelpls.fit() that resulted in incorrect results when fitting
mulitresponse models with fewer responses than predictors
- Changed default radii in corrplot()
- It is now
2013 Jul 13
1
Alternative to eval(cl, parent.frame()) ?
Dear developeRs,
I maintain a package 'pls', which has a main fit function mvr(), and
functions plsr() and pcr() which are meant to take the same arguments as
mvr() and do exactly the same, but have different default values for the
'method' argument. The three functions are all exported from the name
space.
In the 'pre namespace' era, I took inspiration from lm() and
2010 Jan 18
2
Rotating pca scores
Dear Folks
I need to rotate PCA loadings and scores using R.
I have run a pca using princomp and I have rotated PCA results with
varimax. Using varimax R gives me back just rotated PC loadings without
rotated PC scores.
Does anybody know how I can obtain/calculate rotated PC scores with R?
Your kindly help is appreciated in advance
Francesca
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2003 Jan 30
3
Principal comp. scores in R
Hello, I am trying to run a PCA in R and I cannot get the PC scores for
each of the values. Using pcX <- princomp(X) then loadings(pcX) I can get a
listing of the eigenvectors but not the actual PC scores for each value in
the dataset. I greatly appreciate any help anyone can offer
Thanks
Ken