similar to: problem installing packages with compiled-from-source R.app on Mac OS X - Tiger

Hello, I am having trouble loading Matrix (0.96-3) in self-compiled R-2.1.1- beta, and self compiled R.app (got it a couple of days ago via: svn co https://svn.r-project.org/R-packages/trunk/Mac-GUI Mac-GUI ) on Mac OS 10.4.1. The problem I get when I try to load Matrix is the following: (I know I do not need to worry about the warnings, even though it might be nice to know why they

Hello all, I would like to fit a mixed effects model, but my response is of the negative binomial (or overdispersed poisson) family. The only (?) package that looks like it can do this is glmm.ADMB (but it cannot run on Mac OS X - please correct me if I am wrong!) [1] I think that glmmML {glmmML}, lmer {Matrix}, and glmmPQL {MASS} do not provide this "family" (i.e. nbinom, or

Dear all (copying the package author), I have a question on the vlmc package. I am trying to model a time series, where each element can take one of 11 values (the result of some clustering). When I run the following command (synthetic data to facilitate self-contained example) I get the following warning: ("alphabet with >1-letter strings; trying to abbreviate") +++ START+++ >

Let me redirect the topic a bit. I've been considering unbundling gregmisc. The pro would be that people would find the component packages (i.e. gdata) more easily. The con is that the packages have a number of interdependencies, so you pretty much will need to get most of them anyway. As the latest gregmisc bundle contains a gregmisc package that is just a stub that depends on and loads

Let me redirect the topic a bit. I've been considering unbundling gregmisc. The pro would be that people would find the component packages (i.e. gdata) more easily. The con is that the packages have a number of interdependencies, so you pretty much will need to get most of them anyway. As the latest gregmisc bundle contains a gregmisc package that is just a stub that depends on and loads

Hello, I just installed R-2.15.0 on windows XP and cannot load package tcltk2 (which I just downloaded from CRAN as tcltk2_1.2-1.zip; package install reported no problems): > library(tcltk2) Carico il pacchetto richiesto: tcltk Loading Tcl/Tk interface ... done Error : .onLoad failed in loadNamespace() for 'tcltk2', details: call: system("cat /etc/issue", intern = TRUE,

Dear all I am tryiing to fit the following lme with an ARMA correlation structure: test <- lme(fixed=fev1f~year, random=~1|id2, data=pheno2, correlation=corARMA(value=0.2, form=~year|id2), na.action=na.omit) But I get the following error message: Error in getGroupsFormula.default(correlation, asList = TRUE) : "Form" argument must be a formula I have used this same form

Greetings, Could someone give me some help on how to solve problems with packages? This worked just yesterday. Today I get an error. ? > library(Rcmdr) Error in structure(.External("dotTclObjv", objv, PACKAGE = "tcltk"), class = "tclObj") : [tcl] invalid command name "font". Error : .onAttach failed in 'attachNamespace' Error:

Hi WizaRds, I'd like to overplot UK fuel consumption per quarter over the course of five years. Sounds simple enough? Unless I'm missing something, the following seems very involved for what I'm trying to do. Any suggestions on simplifications? The way I did it is awkward mainly because of the first call to plot ... but isn't this necessary, especially to set limits for the

I have been attempting to use cph models to get better calibration of my models for which I had originally used logistic regression. I tried running with 40 repetitions and got an error. I then tried 500 repetitions (thinking that the NaNs in the output below might be caused by that choice) and then let my computer crunch for several hours and got only the same error message and

Hello, I am a new R user and I am trying to estimate some generalized linear models (glm). I am trying to compare a model with a gaussian distribution and an identity link function, and a poisson model with a log link function. My problem is that while the gaussian model has significantly lower (i.e. "better") AIC (Akaike Information Criterion) most of the coefficients are not

Message 2 of today: it works now. After re-installing R.app from the same R-2.1.0.dmg file, and fixInNamespace'ing(*) install.packages(), I managed to update 23 outdated packages from CRAN binaries for MacOS X. What I did was to: 1. change call to .install.macbinaries() into call to install.binaries() in install.packages(). install.binaries() is a function defined utils/R/aqua/GUI.R. 2. I

Hi, I have a linux SuSE 8.1 with samba 2.2.5 Release 80. I have a Windows XP Professional that is member of a Samba domain, authentication it's OK but i have a profile in /usr/lib/samba/netlogon that i want to execute when the XP boots, i don't know what's happening. I have read the "How to" documentation Can you help me, please? Thanks a lot.

Full_Name: Jari Oksanen Version: R 2.1.0 OS: MacOS 10.3.9 Submission from: (NULL) (130.231.102.145) For various reasons (which need not be expanded here) I have tried to update my long neglected R in MacOS X using handy command line tool update.packages() using readily available binaries of contributed packages at CRAN. However, this fails with message saying that packages xxxx_*_tar.gz is not

Hi. On all of my machines, except for a netbook cursed with the GMA500 chipset, the R packages are synced to lenny-cran. I have been using rpy in a chroot using the official lenny R packages (2.7.1) given that i have not been able to find compatible rpy deb packages to work with lenny-cran. I am able to build the rpy deb package from source in a 32-bit lenny chroot (with the stock R packages)

Hi, I'm running Ubuntu Jaunty, downloading R and Rpy from this repository: deb http://cran.uk.r-project.org/bin/linux/ubuntu jaunty/ When was automatically upgraded, Rpy (which should be downloaded from the same repository) seems to have stopped working. I've tried re-installing the python-rpy package manually. I get the following error when I try to import rpy: >>> import

Dear Mr Moderator, please let me through. I want to reply to my own thread. I once subscribed to this list, but then my subscription was not accepted. Now to the business: The final failure came from missing .install.macbinary() function. I grepped R-patched sourcesand the only instance of .install.macbinary() was the call to the function in R- patched/src/library/utils/R/packages2.R (stupid

All- Thanks in advance for your help. I'm trying to call R function using Python in a windows environment and have downloaded the Rpy library however it doesn't appear to work with R 2.7.2. Does anyone know if a new version of Rpy exists for windows that will work with R and where it can be downloaded from? Here's an example of the error I'm getting:

Hi CRAN people, There is an issue with python-rpy on Ubuntu, when installed from the CRAN repository. (I read the info on http://cran.r-project.org/bin/linux/ubuntu/ and saw the note that this package is experimental but you are happy to receive feedback on it.) After adding the appropriate CRAN repo: % sudo apt-get install python-rpy [ ... installs various dependencies ... ] % echo import rpy |

Hi, I am getting the following error when I try to run import rpy from the the python IDE: Traceback (most recent call last): File "<stdin>", line 1, in <module> File "/usr/lib/python2.6/dist-packages/rpy.py", line 134, in <module> """ % RVERSION) RuntimeError: No module named _rpy2122 RPy module can not be imported. Please