similar to: showMethods doubt

Hi, This strange warning happen sometimes when running 'R CMD check': * checking whether the package can be loaded with stated dependencies ... WARNING Error : .onLoad failed in loadNamespace() for ?pkgB?, details: call: length(new("A")) error: could not find function "loadMethod" Error: package/namespace load failed for ?pkgB? Execution halted

Sorry in advance if this is too simple a question, but I'm stuck with some odd behavior and I can't find the text to rid myself of this (admittedly somewhat trivial) problem. Note that I've done generic programming with S3 "objects" in the past, but I've never really dabbled in creating S4 objects until now. So, I've created a new S4 class, call it

Hello everyone, I'm working on a package using S4 classes and methods and I ran into the following "problem" when I tried to create an "apply" method for objects of one of my new classes. I've found a way around the problem but I wonder if I did not paint myself into the corner. I'd like your opinion about that. So I have an object "myObj" of class

showMethods isn't reporting inherited methods when it is first called. The methods are there and after calling them, showMethods gives the right output. Here is an example (using R-devel r39647): setClass("A", representation(x="numeric"), prototype=list(x=1)) setClass("B", contains="A", prototype=list(x=2))

(a new thread, on purpose) >>>>> "RobG" == Robert Gentleman <rgentlem at fhcrc.org> >>>>> on Mon, 27 Jul 2009 16:55:50 -0700 writes: RobG> Hi, I just committed a change to R-devel so that if RobG> debug is called on an S3 generic function, all methods RobG> will also automatically have debug turned on for them RobG>

Hi, I ran into the following peculiarity involving S4 method dispatch and namespaces. I develop a package which have a namespace and which depends on 'pixmap' package, which itself does not have a namespace. Now, in my package I have a class which has a slot for objects from class "pixmap" and I want to have a "plot" method for this new class. Not to clutter the

Hi, The following question might come from my (deep) misunderstanding of the concepts in the package 'methods'. I have a class 'A', and a class 'B' inheriting 'A' (so defined with 'setClass' and the parameter 'contains="A"'. The class A has a method 'mymethod'. A call to 'showMethods("mymethod")' return the

On Thu, 2016-04-14 at 18:07 +0100, Jonathan Hunter wrote: > On 14 April 2016 at 13:37, Jonathan Hunter <jmhunter1 at gmail.com> > wrote: > > > # samba-tool dbcheck --cross-ncs > > Checking 4079 objects > > MYOBJ=value,OU=myou,DC=mydomain,DC=org,DC=uk: 0x00290001 > > MYOBJ=value,OU=myou,DC=mydomain,DC=org,DC=uk: 0x0029000a > >

Thank you, Andrew - I hadn't done so. (In a good way, I haven't yet had problems with samba that have caused me to delve quite so deeply into the DB :) so I'm not as familiar with the range of tools as I could be, sorry!) This has flagged up quite a few errors, all along the lines of: # samba-tool dbcheck --cross-ncs Checking 4079 objects MYOBJ=value,OU=myou,DC=mydomain,DC=org,DC=uk:

Hi all, this is probably some tricky configuration file problem, but I figure someone here might have come across this in the past: In short, I've been using Rscript to run my scripts, usually successfully. But recently I've run into a strange problem, and the only function that causes an error is "print". I can create a file that contains only a print command, and it causes

Hi there, I''d like to choose between an "static" and "dynamic" access of a reference class field, say ''a''. myObj <- getRefClass("Blabla")$new() Static: myObj$a Dynamic: myObj$a.get() where the function retrieves the data from a database (or some other location), stores it to a buffer and

Hi all, Could you please help me? I am having the following weird problem when debugging R programs using "browser()": In my function, I've inserted a "browser()" in front of Step 1. My function has 3 steps and at the end of each step, it will print out the message "Step i is done"... However, after I hit <ENTER> when the program stopped before Step 1

Hi the list, I am defining S4 objet. Is it possbile to define a method that change the slot of an object without using <- ? My object contain a numeric and a matrix. At some point, I would like to impute the missing value in the matrix. So I would like to use something like : ----------------- setClass("MyObj",representation(time="numeric",traj="matrix")) a

Hi all, I have the following problem: I have a csv-file consisting of timestamp values (no dates), e.g.: Timestamp1;Timestamp2; 05:24:43;05:25:05; 15:47:02;15:47:22; 18:36:05;18:36:24; 15:21:24;15:22:04; I need a vector with the difference of the two timestamps, so I read the data with the read.csv-function: myObj <- read.csv("file.csv",header=TRUE,sep=";"). I have then

Dear list, here is a problem I met when trying to use a method for an S4 object, without loading the package in which the method was defined. I do not know if this is a bug, or a mistake of mine. Normally, I think the package in which the appropriate method is defined is loaded automatically when calling the method. The problem is that if the package is indeed loaded automatically, the

Hi, when running the following on a fresh R, library("IRanges") annotation showMethods("annotation") Biobase:::annotation showMethods("annotation") I get (see the "^^^^^" marked output at the bottom): > library("IRanges") Carico il pacchetto richiesto: 'IRanges' The following object(s) are masked from package:base :

On Fri, 2016-04-15 at 00:32 +0100, Jonathan Hunter wrote: > Thank you Andrew, really appreciated. > > I have now run 'samba-tool dbcheck --cross-ncs --fix' and it has > successfully fixed some errors; there were 110 previously, however > there are still 69 remaining after a second pass of dbcheck --fix. > > The remaining errors seem to be mainly of this form: >

Hi all, Can anyone help me understand why an implicit print (i.e. just typing df at the console), is so much slower than an explicit print (i.e. print(df)) in the example below? I see the difference in both Rstudio and in a terminal. # Construct large df as quickly as possible dummy <- 1:18e6 df <- lapply(1:10, function(x) dummy) names(df) <- letters[1:10] class(df) <-

Hi! Like to write quite a lot (ca 100) of objects from my envirovment with save. The names of the objects are in a list nam. nam<-dir() nam<-grep("E",nam,value=T) length(nam) 20 for(x in nam) { #reads the objects and assigns the names. assign(x,simFromEmboss(Simmatrix(),x)) nnam<-paste(x,".rda",sep="") print(nnam) save(x,file=nnam) } I knew that

> biplot standardGeneric for "biplot" defined from package "stats" function (x, ...) standardGeneric("biplot") <environment: 0x0d4444d8> Methods may be defined for arguments: x Use showMethods("biplot") for currently available ones. > > > showMethods("biplot") Function: biplot (package stats) x="ANY"