similar to: ANOSIM

Hello all, I used google and looked at the documentation to find out why the ADONIS function is called adonis (in the vegan package). I am writing a document and would like to include a abbreviation list (similar to "ANOSIM = Analysis of Similarities"). regards, Steve

Dear vegan team, Vegan development happens now completely in github. R-Forge repository is no more in sync with github. I tried to commit all github changes to R-Forge, but a week ago I got a conflict in file and I haven't had time to resolve that conflict. You can follow vegan development and vegan discussion also without signing to github. The system seems to be completely open and does not

Hi, I was wondering if there is more flexibility in the output of dendrograms when plotting a hclust object. I can't seem to find information on how to change the default output of a "hanging" style tree with the axis on the right to a left-to-right plot with and axis on the bottom. Example code follows: library(vegan) #loads the "vegan" module that compuptes ANOSIM

Hi, My name is Mauro Belleggia, I m doing an ANOSIM (using "vegan" package) to test statistically whether there is a significant difference between 3 (1,2 and 3) groups of sampling units. My results were: Call: anosim(dis = distancias, grouping = Lt) Dissimilarity: bray ANOSIM statistic R: 0.1313 Significance: < 0.001 Based on 1000 permutations Empirical upper confidence

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Hello R-help Readers I'm currently in the process of trying to write a permutation test procedure for looking at differences between groups with a multivariate data set (something equivalent to ANOSIM - analaysis of similarities for those familiar with this test). As with other permutation tests, for cases where there are large numbers of possible permutations, randomly sampling from these

Greetings: When using R within GRASS6, and loading the rgdal library, I encounter an error loading a specific version of the HDF5 library that does not occur when I perform the same operation in R 'outside' of GRASS6: Here is a record of the error on my ubuntu system: ---------- Start --------- reeves at wallace:~$ grass2 Cleaning up temporary files..... Starting GRASS ... Welcome to

Hello: I would like to superimpose vector polygons (state outlines) from a Shape file on top of a satellite image, imported into a SpatialGridDataFrame from GEOTIFF via gdal_translate and readGDAL. When I plot polygon and point shape files in R, into SpatialPointDataFrame and SpatialPolygonDataFrame, the two feature sets line up geographically, so it seems logical that a SpatialGridDataFrame

Hi, I was wondering if someone can tell me what is the difference between "strata" argument (function "adonis" in "vegan" package) and using random effects in PERMANOVA+ add-on package to PRIMER6 when doing permutational MANOVA-s? Is the way permutations are done the same? Thank you very much in advance, Vesna -- View this message in context:

Dear List, I have been experimenting with building packages from sources, having previously relied upon the binaries. I downloaded and installed all the tools suggested in http://www.stats.ox.ac.uk/pub/Rtools/ , including ActivePerl 5.6.1.631. I also downloaded the HTML Help workshop exe and installed it. During install though, a message popped up to say that I had a newer version of the

It seems the fix has not been ported to the patched version of R on Windows yet. I just tested R version 3.5.0 Patched (2018-04-27 r74667). IMHO this bug is so bad that it is worth a new release R 3.5.1 before it starts biting more users like this one https://stackoverflow.com/q/50077412/559676. BTW, although the bug has been fixed (https://github.com/wch/r-source/commit/c29f694), I think it will

Thanks, actually this is because the snapshot build is still one version behind (74642, the fix is in 74643). When I build my own installer and install it seems to be working fine. Sorry for the confusion, Tomas On 04/26/2018 02:49 PM, Kerry Jackson wrote: > Hi Tomas, > > Thanks for the info about the binary builds; I did install it, however the bug still seems to be there in the

> Dear Tomas, > > thank you for fixing the bug, I still do not find it mentioned in the > changelog though (neither R-patched nor R-devel), also, see inline below > > On Sat, Apr 28, 2018 at 11:36 PM, Tomas Kalibera <tomas.kalibera at gmail.com > > wrote: > >> >> I don't have an opinion if this requires 3.5.1 to be released soon(er), >> but I

okee, I put the oddcast help online at: http://www.radioqualia.net/oddcast i have to appologise twice for this, because the formatting is kinda crappy and i just converted it from a word doc with a straight doc->html export :/ will fix in the coming weeks but its online for now...also if anyone can give some more informatiuon about the oddcast encoder settings then please let me know so i

Hi I am new to Cygwin and Linux. I installed R under Cygwin as part of the setup I chose "All" during installation, for all packages. So I have the FULL installlation of cygwin up and running, including gfortran. *Under Cygwin, how do I check and configure the path to the various libraries?* I am trying below command and it says, cannot find "lgfortran" But I have installed

I have just installed R under Linux and had a tricky time finding out that I needed to install r-devel as it was not suggested by yum and does not appear in any of the FAQs. Everything was fine until I tried to install tseries then I was told in the compiler output that R.h was missing. Obviously a search on Google proved fruitless and I was forced to ask on r-help. I am now kicking myself, of

Absolutely!! That was one thing that I was missing and would have like to have included. You can either send me the data or let us know the link. If you wouldn't mind adding to this HOWTO and I will post a link to your page so that people would know where I got the original files. Sounds good. KJ <p>On Wed, 2003-02-12 at 10:37, adam wrote: > looks great! :-) > > if you like i

> Message: 3 > Date: Wed, 29 Apr 2009 16:53:49 +0300 > From: Odhiambo ????? <odhiambo at gmail.com> > Subject: Re: [Dovecot] How do I get my mail from fetchmail into > dovecot? > To: Dovecot Mailing List <dovecot at dovecot.org> > Message-ID: > <991123400904290653g205c603m2e4b511486a69b52 at mail.gmail.com> > Content-Type: text/plain;

It can but is probably not as nice as youwould like. flac -t *.flac if errorlevel 1 goto fail goto exit :fail echo Danger Will Robinson! Flac files failed integrity check. :exit For this reason cygwin and its bash for windows does a lot more. Notes on the batch file fragment above: if errorlevel 1 goto actually means if errorlevel 1 or greater so don't try if errorlevel 0 since it will

On 04/26/2018 02:23 PM, Kerry Jackson wrote: > Thanks Tomas. > > I confirm the quick workaround works for me in the DOS prompt, and when having a shortcut to RScript in SendTo, and when used in the Task Scheduler. I have not tested the R-devel version, due to my unfamiliarity with installing from source code. Thanks, Kerry. There are binary builds for daily snapshots of R-devel