similar to: dependency help for FC2 rpm

Hello, I would like to create an ascii text file that looks exactly like the Console output of a split() action. I have tried save, dput, dump, write.foreign and write to no avail. The resulting text files are a jumble of data that I would have to edit heavily in order to use it for my proposed purpose. How can I, short of copying and pasting the contents of the console (which will not work

Hello, I've been using odbcConnectExcel to connect to a spreadsheet database containing a single worksheet. Unfortunately when I try to access the data R cannot see the table. When I run sqlTables it shows the worksheet as a SYSTEM TABLE instead of as a TABLE that I can access. I am fairly certain that I am do all of the same things I've done in the past when it worked just fine.

Dear list, I cannot load the tcltk library: > library(tcltk) Loading Tcl/Tk interface ... Error in fun(...) : Can't find a usable tk.tcl in the following directories: /usr/share/tcltk/tcl8.4/tk8.4 ./lib/tk8.4 /usr/local/lib/tcltk/tk8.4 /usr/local/share/tcltk/tk8.4 /usr/lib/tcltk/tk8.4 /usr/share/tcltk/tk8.4 ./library ./tk8.4.16/library This probably means that tk wasn't

Hi, I have a problem with puppet upgrade from 2.7 to 3.0 on centos 5. I have included the puppet dependencies repo for el5 (http://yum.puppetlabs.com/el/5/dependencies/x86_64/) to upgrade my ruby version to 1.8.7. However a "yum install ruby" will give me ruby 1.8.5 from the centos base repo. If i disable the base repo i get ruby 1.8.7 but ruby-libs has depsolving problems - it

I am trying to install R on Linux (Redhat 4). But 'yum' does not seem to work... thanks for your help/hints/suggestions in advance! ------------ $ sudo cat /proc/version Linux version 2.6.34.6-54.24.amzn1.i686 (mockbuild at build-31003.build) (gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)) #1 SMP Fri Sep 17 23:13:59 UTC 2010 $ sudo yum install

Dear developeRs, I use Red Hat Enterprise Linux WS release 4 (Nahant Update 2) on an x86_64 machine (two Intel P4 CPUs with 64 bit support), and R-beta_2005-12-12_r36712.tar.gz. If I run configure without any options, it does not list tcltk among the supported interfaces: ./configure [...] R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory:

Hi, 'revdep-rebuild' under GENTOO shows me that /usr/lib64/R/library/tkrplot/libs/tkrplot.so, which was installed at April 24th, is broken. 'ldd /usr/lib64/R/library/tkrplot/libs/tkrplot.so' shows me that tkrplot.so needs libtcl8.4.so and libtk8.4.so, which is no more installed since the installation of tcl,tk-8.5.7, which has happened at april 26th. But revdep-rebuild can't

Hi, I'm using a Mac, I've downloaded R (base), and I'm trying to download the package R Commander. I thought I had already done this (both from the web and from within R) but it doesn't seem to be working - it's not there as a "search()" reveals. However, there are plenty of files on my system linked with Rcmdr - located in

Hello; Well, I'm afraid this is the second related problem I report in two days (I'm sorry for this) I've programmed a tcltk interface for a model and it includes a comboBox. The comboBox widget comes with the "BWidgets" library of Tcl/Tk. It works all perfectly with the windows R GUI (with the help of Prof. B. Ripley), following the advices in ?Startup, but I would like

I use Mac. I installed R with the download from R-project, so R is in /usr/bin/R. My TclTk library is installed via fink (although I don't remember I intentionally installed it) so libtk8.4.dylib is in /sw/lib. I tried to install the HDF5 package from within R: >install.packages('hdf5') and it failed like this ------- Loading Tcl/Tk interface ... Error in dyn.load(x,

I know this is a FAQ and that it''s been discussed much before, I''m just looking for a few key things. I need to setup our gateway so that traffic FROM a range of IPs is sent out, masqueraded, via a new cable connection. I''m running 2.6.9. Am I going to require any of the CONNMARK patches or other patches from http://www.ssi.bg/~ja/#routes? I''m really not sure

As suggested here: http://lists.shorewall.net/pipermail/shorewall-users/2004-October/015097.html I''ve run: adam@shrike:~$ /sbin/iptables -m policy --help iptables v1.2.11 Usage: iptables -[AD] chain rule-specification [options] iptables -[RI] chain rulenum rule-specification [options] iptables -D chain rulenum [options] --snip-- And: adam@shrike:~$ sudo

I am experiencing strange (to me) output when trying to do simple calculations. Expressions that should equal zero yield non-zero values. Examples: > a <- 4.1-3.1 > b <- 5.1-4.1 > a-b [1] -4.440892e-16 > (4.1-3.1)-(5.1-4.1) [1] -4.440892e-16 When this last expression is expanded, I get the right answer: > 4.1-3.1-5.1+4.1 [1] 0 I am using the binary packaged version

You asked the same question on the Bioconductor mailing list back in August. At that time, you suggested yourself a solution for how the adjusted p-values should be interpreted. I answered your query and told you that your interpretation was correct. So I'm not sure what more can be said, except that you should read the article Wright (1992), which is cited in the help entry for p.adjust(),

Hi list, Well I really didn't want to see things get to this point, but Sherman at Sipura along with their President Jan F. leave me no other choice. SIPURA has been provided a letter from our attorney for Breach of Contract and damages. They have yet to respond. A quick background. 1. Sherman (SIPURA's Director of Marketing), stated that we would do a join press release for the Oct

Dear R-Help, I am using the function "topTable" from the LIMMA package. To estimate adjusted P-values there are several options (adjust="fdr" , adjust="BH") as shown below: topTable(fit, number = 10, adjust = "BH", fit$Name) I guess any of these options (fdr, BH, etc.) is using a default of FDR=0.05 which is quite conservative (i.e., very

Hola a todos, Tengo un pequeño problemilla... Tengo unas 9000 variables que he contrastado con 1 en concreto con el test de wilcoxon. He calculado el p-valor, y queria corregirlo con el permutation-based FDR. He encontrado una funcion con R comp.fdr()que hace esta corrección, pero te pide que le pongas las variables con las observaciones y te hace el test (según he entendido). Yo solo quiero

I''m having a problem where transferring files accross our IPsec gateway to another host on a remote network is failing. I see no packets being rejected in the logs. Attached is a packet trace, showing the problem. In this case, 10.100.0.0/24 is the local network and 10.100.14.0/24 is the remote network. The trace was taken on the local gateway. In the trace, there is a set of TCP

Dear All, It is not a typical R question (though I use R for this) but I thought someone will help me. For the list of P values, I have calculated FDR using p.adjust() in R (bioconductor). But my FDR values are same for all the P values. When do we get same FDR values? Does the smallest P values should less than 1/N? (where N is the number of P values) Thanks in advance. Kind regards, Ezhil

I am getting the following error in my script. I am very very new to R and have obtained this script from another person. #read file in (dummy data) starburst.plot<-function(affy.fold, affy.FDR)(ifelse( ((affy.fold) >=0), -1*log10(affy.FDR), 1*log10(affy.FDR))) starburst.plot<-function(meth.fold, meth.FDR)(ifelse( ((meth.fold) >=0), -1*log10(meth.FDR), 1*log10(affy.FDR))) At my next