similar to: OS X proxy question

I was trying to install R on a unix server. Because of a firewall i can't install biocLite for working with Bioconductor. With windows it wasn't a problem. I used the option '--internet2' to bypass the firewall. I don't have any idea, how to do it with unix. I tried to set my proxy >Sys.putenv("http_proxy"="http...:8080")

Hi, I was trying to update packages with my R 1.6 under RedHat 8.0 system. When entering this command, > update.packages() It simply says, trying URL `http://cran.r-project.org/src/contrib/PACKAGES' But nothing happens. Is this a problem with my proxy setting since I am working behind a firewall? It seems so: > Sys.getenv("http_proxy") http_proxy

Greetings, I installed a squid 3.1.10.i686 squid to a centos 6.2i686. The proxy is working fine with the default config. After I decided to use it as a transparent proxy, I added two lines to config: http_proxy 10.0.5.1:3128 transparent, always_direct allow all http_port 10.0.5.1:3128 transparent # # Recommended minimum configuration: # acl manager proto cache_object #acl localhost src

Hi all, my uni has recently switched to using a proxy (with password) for accessing Web pages outside the uni. I have since found that "update packages" etc no longer seem to work from R. I have tried to fix this problem in two ways:- 1) renaming internet2.dll to internet.dll in the "Modeules" folder and proceeding as usual. When I tried "update packages" from the

Hi all, I have emails with multiple Delivered-To: headers in them. The problem is that the SEARCH command only searches in the first instances. For example: 1 FETCH 14557 BODY[HEADER.FIELDS (Delivered-To)] * 14557 FETCH (BODY[HEADER.FIELDS (DELIVERED-TO)] {85} Delivered-To: pozsy at ojjektum.uhulinux.hu Delivered-To: szamlagyar at uhusystems.com ) 1 OK Fetch completed. 1 SEARCH HEADER

Hi all, I used to connect internet via a proxy. Before update packages I wrote in R Sys.putenv("http_proxy"="http://proxy3.redegov.sp.gov.br:80/") Nevertheless the way the connection is done has changed. For example, in the browser the proxy is not indicated and I have to give an username and a password to have access to internet. I read the FAQ and the help for

I have been trying to get the R and package update functions in the GUI version of R to work on my Mac. Initially I got error messages that suggested I needed to set up the http_proxy for GUI R to use, but how can this be done? I eventually got to the point of writing a .bash_profile file in the Bash terminal and setting the proxy addresses there. I can now use my Bash terminal, invoke R,

Has anyone else ran into problems installing Rggobi with R 2.0.1 on a windows platform? I've followed all the instructions available and I still can not get R to recognize Rggobi as a library (package). I I've already emailed Duncan Temple Lange at ggobi.org and bell labs and both emails have bounced back. Any help would be greatly appreciated. -Drew Balazs

Dear users, please help to define the following data structure: I would like to have a matrix, where every element is a container of different size , containing real numbers. The containers (bins) are addressed by an index pair [i,j] (i is number of corresponding row of the matrix, j is the coloumn of the matrix). The containers are initially empty, I would like to fill them

Helo, please look at the log below: after loading the fSeries library, I can not use the log function. Is this a bug or what am I doing wrong? Because of this, I'm unable to use the garch library. thanks a lot for any help, Balazs Torma > log(1) [1] 0 > require("fSeries") Loading required package: fSeries Loading required package: robustbase Loading required package:

I need help regarding to the following problem: Consider this matrix: > M <- matrix(c(1,2, 4,3, 1, 2),3, 2, byrow=TRUE) > M [,1] [,2] [1,] 1 2 [2,] 4 3 [3,] 1 2 I would like to have a matrix which counts the identical rows and places the counts into its third column. I tried with ftable(): > as.data.frame(ftable(M[,1], M[,2])) Var1 Var2 Freq 1 1 2

Hi, I am using Tinn-R and somehow I cannot point it to start a R shortcut with http_proxy settings including authentification. It always shows the .exe. Is there any way to set the proxy from within R or any other ideas how to do it? I am using R 2.4 for Windows. Thanks a million, Werner

Hi Thanks once again for your help, I do appreciate it..... however.... Here is what I get with your test.... (under tcsh - i normally use bash, but I will keep everything the same) users/mwatson> env http_proxy=http://wwwcache.bbsrc.ac.uk:8080/ R >options(internet.info=0) >update.packages() trying URL `http://cran.r-project.org/src/contrib/PACKAGES' unable to connect to

Hello everybody, I'm trying to install rJava to use JRI in a Java program as JRI is a part of rJava. There should be the option to install this package via install.packages("rJava"). Unfortunately I'm connected to the internet via a proxy. I have no idea how to tell R to connect via the proxy. The R-help tells me something about environment variables like "http_proxy".

Hi, Could some please tell me what it means if I find sometimes the following message written to the console or the bootup log under Debian Linux: smb_get_lenght: recv error=5 smb_trans2_request: result=-5, invalid setting Samba version is: 2.2.2debian-2 (And other then the occasional message I see no problem with it.) I've tried to look for some info on error messages but I didn't

Is there a way to use the cycle variable for rowname? v=1:6 for (a in 1:3){ for (b in 4:5) { v=rbind(v,a.b=1) } } v This above obviously does not work, but I couldn't find out how to use a and b to construct a rowname like 14, 15, 24, 25. Thanks for the help. Balazs -- View this message in context: http://www.nabble.com/using-for-variable-as-rowname-tp19533203p19533203.html Sent from

This is my second posting on this topic, the first recieved no replies. Has anyone successfully used RODBC on the OS X platform? I've tested the ODBC drivers I'm using with two other applications and I've had no problems. I begining to think the problem is with R/RODBC and not the drivers. Here are the specifics: I'm having a problem connecting to an MS SQL Database via RODBC

I recently installed 4.8-stable. When running lynx, I can only access sites outside my LAN by launching lynx as root. I can't access external sites if I launch lynx using sudo or after su-ing to root. I've searched archives and googled, and haven't found anything on this. It happened immediately after the upgrade, before any post-installation configuration, i.e. before setting up

I have been using Locomotive for rails development and recently decided to fix up the ruby/rails install that is on my mac. As we all know, Ruby 1.8.2 came on the mac and has problems, so I followed the instructions at Hivelogic for installing the latest versions of Ruby, Rails, Lighttpd and so forth. I have this set in my path within bash_login: export

This does seem to fix my problem: > Sys.getenv("http_proxy") http_proxy "http://gproxy1.pfizer.com/" > url("http://cran.r-project.org/src/contrib/PACKAGES",'r') description "http://cran.r-project.org/src/contrib/PACKAGES" class