similar to: Need your help with my R plot

Thank you all for your help :-) Much Much Aprreciated........ I tried with the "jitter" command and it worked :-) Cheers, Latha > -----Original Message----- > From: Latha Raja > Sent: Monday, February 07, 2005 3:21 PM > To: 'r-help at stat.math.ethz.ch' > Subject: Need your help with my R plot > Importance: High > > Hi, > > I am using R to

Hi, I am using R to perform wilcox.test and wondering if you know how the p-value in wilcox.test is calculated? Thank you for your help:-) Regards, Latha

Hi, I clustered a distance matrix and would like to draw it using plot.hclust or plot.dendrogram. The dendrogram is not informative because I have a few extremely small dissimilarities in the distance matrix (e.g. 0), but most of the other distances are in the range 1e10+-5000. I would like to show the tree only for the height of 1e10+-5000 but unfortunately their are no parameter like

I have been trying to connect to MySQL thru rails. Initially I had rails 2.1.2 and upgraded to rails 2.2 to use RestAPI in sproutcore. Once I have upgraded my rails version to 2.2, I have been getting this error. All I did is the following: 1. rails addressbook 2. cd addressbook 3. script/generate scaffold Contact first_name:string lastname:string 4. rake db:migrate I also change the

Hi, Would like to use to the hexbin package to plot a 2D hist - because it looks really _cool_. My problem is related to drawing a pdf hexbin graphic in series of other graphics. All other figures have a par(mar=c(3.2,3.2,1,1)). So the gplot.hexbin figure in this series looks a little alienated? Was trying a to specify the _mar_ using par, viewport, hexViewport etc. a little. My question. How

Hi, I want to draw a scatter plot with 1M and more points and save it as pdf. This makes the pdf file large. So i tried to save the file first as png and than convert it to pdf. This looks OK if printed but if viewed e.g. with acrobat as document figure the quality is bad. Anyone knows a way to reduce the size but keep the quality? /E -- Dipl. bio-chem. Witold Eryk Wolski MPI-Moleculare

Hey everyone, I have been looking for a while for ways to integrate R's wonderful functions into my C++ software, but I have not found anything concrete. So finally, i post to this list to see if anyouse else knows about this, or has done it!? Is it possible? Are there C++ or C R libraries? Or is it sufficiently easy to build them? your help is much appreciated! thanks doktora

Hi- I used to use "<<-" to do assignment inside a class method, and just found that now it is broken in R 2.0. For example, the following code ----------------------------------------------------------------------- setClass( "myclass", representation(x="numeric") ) setGeneric("incrXByOne", function(obj) standardGeneric("incrXByOne"))

Hi, hres <- hclust(smatr,method="single") hresd<-as.dendrogram(hres) as.dendrogram(hres) `dendrogram' with 2 branches and 380 members total, at height 2514.513 plot(hresd,leaflab="none") #<-error here. #the plotted dendrogram is incomplete. The x axis is not drawn. #The interested reader can download the save(hresd,file="hres.rda") #from the

Hello, am I using 'setIs' in the correct way in the subsequent (artifical) example? Do I have to specify explicit 'setAs' for 'list' and 'vector' or should this work automatically, since "getClass("List1")" states an explicit coerce also for these classes. I'm working with R 2.0.0 Patched (2004-10-06) on windows 2000. Thanks for your

I have an S4 class with a slot of class "array", and in upgrading to 2.0.1 (from 1.9.1) I have encountered a change in behaviour. This causes me some difficulties if I want to allow 2-dimensional arrays in the slot. The following (in 2.0.1) illustrates the point: > setClass("foo",representation("array")) [1] "foo" > a <-

I have question regarding package installation. What is the difference between check, INSTALL, build and build --binary, which imply which and what order does one normally perform them? I have been trying: R CMD build /mypackage R CMD check /mypackage R CMD build --binary /mypackage in that order but wanted to check that this is right. Also, what portion of the check process can be run

Hello, I'm hoping that there is an easier way to rename columns in a data frame other than by using the names() assignment, which requires you to type in all the column names at once for a data.frame, in the case that I simply want to rename a single column in a data frame. Also, is there an easy way to move columns in a data frame around relative to the other columns? Thanks in

I'm trying to write a function that takes a vector of length n and then takes the first value of the vector i.e j=1 and forms a new vector of length n (i.e replicate the first value n times). This function will then calculate the absoulte difference of the original vector and the new vector and store the results omitting the difference between the value and itself. This function should

Hello, I am getting output from anova() and summary(aov()) that depends on the order of the factors in the fitted model object, and this has me baffled. I see this dependency with the data.frame below but not with an example (table 6.4) from Montgomery's DOE book. This is with R 1.3.0 on Debian GNU-Linux. Where have I gone wrong? > centerpts run sample CH50mg 1 day1 dev126 0.56 2

Hi, How to add values to an array at any position. Asking because of the following: e.g. y<-c(0.1,NaN,0.2,NaN) #or data frame x<-na.omit(y) take some columns from x and do some computation with functions which do not allow NaN 's. After the computing add NaN's at positions stored in attr(x,"na.action") of the result vector. /E -- Dipl. bio-chem. Witold Eryk

Hi, Drawing a legend I would like to be able to specify the color of boxes which are drawn if fill or density is specified. eg. legend(0,40000,c("raw","LR/PR-TPS"),fill=c(1,2),col=c(1,2),density=c(20,20),angle=c(-20,45),bty="n") Currently the color of the boxes -- border is always black and can *not* be changed. To get this option only a *minimal* change is

Hello, I recently upgraded my glibc from 2.0.7 to 2.1.1 and now I cannot get R to start. I get R : Copyright 1999, The R Development Core Team Version 0.64.1 (May 8, 1999) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type "?license" or "?licence" for distribution details. R is a collaborative

Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. ("The Trove is a means to convey basic metainformation about your project.") Today I got the following response of one of the sourceforge admins. <SNIP> SourceForge.net will consider the inclusion of a programming language within

Hi R-Users and Developers, Several months ago I made a request on Sourceforge to add the R/S - programming language to the _Trove_ categorization. ("The Trove is a means to convey basic metainformation about your project.") Today I got the following response of one of the sourceforge admins. <SNIP> SourceForge.net will consider the inclusion of a programming language within