similar to: summing subsets of rows matrices

Hi It clear that to do a classification with svm under 10-fold cross validation one uses svm(Xm, newlabs, type = "C-classification", kernel = "linear",cross = 10) What corresponds to the nnet? nnet(.....,cross=10)? Regards

I use a 32 bit machine. For those using 64 bit machines, what is the .Machine$double.xmin for for machines? regards. Stephen. ----- Original Message ----- From: Achim Zeileis <Achim.Zeileis at wu-wien.ac.at> Date: Tuesday, July 12, 2005 10:51 am Subject: Re: [R] exact values for p-values - more information. > On Tue, 12 Jul 2005, S.O. Nyangoma wrote: > > > > If they

Hi I have a called fil consisting of the following strings. > fil [1] " 102.2 639" " 104.2 224" " 105.1 1159" " 107.1 1148" " 108.1 1376" [6] " 109.2 1092" " 111.2 1238" " 112.2 349" " 113.1 1204" " 114.1 537" [11] " 115.0 303" " 116.1 490"

Dear colleague, Just an e-mail to know if they are people working in the field of chemoinformatic that are using R in their work. If yes I was wondering if we couldn't exchange tips and tricks about the use of R in this area ? Best regards Fred Ooms [[alternative HTML version deleted]]

tabulate has .C("R_tabulate", as.integer(bin), as.integer(length(bin)), as.integer(nbins), ans = integer(nbins), PACKAGE="base")$ans The implementation of R_tabulate has if(x[i] != R_NaInt && x[i] > 0 && x[i] <= *nbin) and so copes with (silently drops) NA. Perhaps the .C could have NAOK=TRUE? This is useful in apply'ing tabulate to

Dear R-Developers, please find attached a set of drafted functions for flat file import and export, partially extending existing functions, partially completely written as new code. I thought you might be interested in those functions and the accompanying utilities for padding and trimming. Main features are - supports several formats, i.e. fixed width and CSV (with one exception) - supports

Hi, I'm trying to setup some complicated binning with statistics and could use a little help. I've found the bin2 function from the ash package, but it doesn't do everything I need. My intention is to copy some of their code and then modify as needed. I have a vector of two columns: head(data) r1 r2 [1,] 0.03516559 0.03102128 [2,] 0.02162539 0.14847034

Hi I want to install eda library. Where can I download it? I use R version 2.1.0 on Linux. Thanks. Stephen. ----- Original Message ----- From: Luis Ridao Cruz <Luisr at frs.fo> Date: Tuesday, September 13, 2005 1:32 pm Subject: Re: [R] How to erase objects > ?rm > > > >>> <v.schlecht at arcor.de> 13/09/2005 12:08:55 >>> > > Hi, I admit that

Hi there, If I do an lm, I get p-vlues as p-value: < 2.2e-16 This is obtained from F =39540 with df1 = 1, df2 = 7025. Suppose am interested in exact value such as p-value = 1.6e-16 (note = and not <) How do I go about it? stephen

Visual inspection of the plot of a density() function vs a normal with the same mean and variance suggests the area under the density curve is bigger than under the normal curve. The two curves are very close over most of the domain. Assuming the normal curve does integrate to 1, this implies the area under density() is > 1. Is there any assurance that the density kernel smoother produces

Dear R users, I'm wanting to sample from the negative binomial distribution using the rnegbin function from the MASS library to create artificial samples for the purpose of doing some power calculations. However, I would like to work with samples that come from a negative binomial distribution that includes only values greater than or equal to 1 (a truncated negative binomial), and I

for example, I have two sets, x and y. I want to draw their histograms using different colors in a graph. I didn't find how to do this by reading ?hist Thanks very much. [[alternative HTML version deleted]]

Hi: Is there a way to get smoothScatter to not clip when I increase the xlim and ylim parameters? Consider the following example: set.seed(17) x1<-rnorm(100) x2<-rnorm(100) smoothScatter(x1,x2) #Now if I increase xlim and ylim notice that the plot seems to be clipped at the former xlim, and ylim boundaries: smoothScatter(x1,x2, xlim=c(-5,5), ylim=c(-5,5)) Thanks. Jen sessionInfo() R

I'm working with a large dataset - large enough that when I do a scatter plot the points all blur together, so I want to plot their density by color - a heat map or something like that. I've used smoothScatter for tasks like this, but the problem is that my current dataset really only looks good on a log-log scale. When I do the following command smoothScatter( data,

Hey We have now published the sixth version of the Newsletter and I think it is time to ask YOU ( the reader ) what we can improve. The current trend is away from really technical details more to a light read and entertaining stuff. Is this a good way to go. Or should we focus more on the technical side again*. Or is the balance right? What do you want to read about? What sections do you want?

Hi All, I have a large dataset I need to re-structure. It looks something like this: YearAreaQBinFD20001150200011101200011152320001120122000112512000215120002110 6200021151120002120132000212532000125020001210120001215232000122012200012251 20002251200022103200022151220002220132000222532001…2011 And I need to create different vectors (Bin, FD) summing by year and/or by area; For example, I need

Peter, I thought this one was noted and fixed, but I could be wrong. R : Copyright 1999, The R Development Core Team Version 0.63.3 (March 6, 1999) .... [Previously saved workspace restored] > tabulate(1:10, 5) Process R:1 segmentation fault at Sat Apr 3 17:48:34 1999 -- (The following contact details become official on 1 May 1999, but the email

Dear Sir / Madam, I am new for R coding. Kindly help me out in sorting out the following problem. There are 50 rows with six coloumns(you could see in the attached .txt file). I wish to go for filtering this 50 rows for any one of the six coloumns satisfying the value >= 64. I need to have a final table with rows having >= 64 value in any one of the six coloumns and the rest could be

Dear R users & Experts, This is just a curiousity, I was wondering why the dominant eigenvetor and eigenvalue of the following matrix is given as the third. I guess this could complicate automatic selection procedures. 0 0 0 0 0 5 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 Please

Hey folks, When I run rsyncd from xinetd and try to rsync I will get permission denied error: rsync: chdir /home/test failed : Permission denied (13) If I shutdown xinetd and start standalone daemon ( rsync --daemon --config /etc/rsyncd.conf) everything works as expected. This is my xinetd config for rsync: service rsync { disable = no socket_type = stream wait