similar to: Importing module into R library

Dear R-users: I am using the package MAANOVA to analyze microarray data and have encountered problems when trying to plot data. I have tried emailing a MAANOVA discussion group, as well as the author of the package, and have not yet received a response so I am hoping that someone on this listserv can be of assistance. There are several functions in MAANOVA (riplot, resiplot) which call the

Does anyone know R is to be cited in a publication? I've looked everywhere on the website and cannot find this. Thanks, Heather -- Heather Maughan Department of Ecology and Evolutionary Biology Biosciences West 310 University of Arizona Tucson, AZ 85701 Phone: 520-626-5108 Fax: 520-621-9190 hmaughan at u.arizona.edu

Hello: I want to use values from the output of linear models done using permuted data to construct a random distribution. The problem I am having is the extraction of a value, say the p-value or the regression coefficient, from the summary of a linear model. When summarizing a linear model I get this: Call: lm(formula = fitness ~ mm) Residuals: Min 1Q Median 3Q Max

Dear R-users: I am doing multiple regressions using the "lm" function and would like to force the intercept to be equal to a specific value (such as 4.3). I was able to find out how to force it through the origin but this does not work for other values. I am also interested in forcing the regression parameters obtained from one regression in another regression with a subset of the

I'm trying to install packages on windows XP and I have trouble with command Rcmd build (R version 1.8.1) : In the Windows console for package maanova for example, answer is : C:\Documents and Settings\dillies\Mes documents\ghis\packages>Rcmd build maanova * checking for file 'maanova/DESCRIPTION' ... OK * preparing 'maanova': * cleaning src *

Hi, I am using "*Maanova* package" to do anova. I have created *datafile* with probeID as the first column, which is a tab limited text file and also created *designfile*. I have created *readma object* which is named as abf1. >From that readma object, i have to create data object by using *createData*function and also i hav to create model object by using *makemodel* function,

Hi, I run a maanova analysis and found this message error: Error in ma.svd(X, 0, 0) : 0 extent dimensions I did a google search and found this: \item ma.svd: function to compute the sigular-value decomposition of a rectangular matrix by using LAPACK routines DEGSVD AND ZGESVD. \item fdr: function to calculate the adjusted P values for FDR control. I did a search for LAPACK and

Hi I'm using a function (arrayview from the maanova package) that produces 12 plots, all in separate windows. How can I get each one to print to a jpeg file as the plots are produced? Alternatively, is it possible to get dev.print (jpeg.....) to print all open graphics devices to separate windows? Thanks in advance, Nat Street -- Nathaniel Street University of Southampton

Hi, I am trying to run an analysis with the package maanova and I am not getting success. I suppose that I am wrong on set up the formula, so the issue may not be related to R, properly. I have two varieties of plants (V1 and V2). A group of each ones were treated and another was not treated. After treatment, in three different time RNA was collected from treated and from not treated plants for

Hi all, I''m building a ror app and have a model with geo-coordinates would like to use the info in the model to generate a google map view, does anyone know what''s the best way to go round this? is is Google API?, I''ve also seen a gmaps4rails, any comments? Thank you in advance, Jax -- You received this message because you are subscribed to the Google Groups

Dear R-users: I am using the package MAANOVA to analyze microarray data and have encountered problems when trying to get interactions. I am a newbie in both, R and maanova, and I do not have good knowledge in statistical methods. I have four effects: Effects Levels Var 2 Ind 2 Trat 2 Time 4 Sample 3 <-- biological replicate Spot 4 <-- technical replicate I had

Hi, I am using "*Maanova* package" to do anova. I have created *datafile* with probeID as the first column, which is a tab limited text file and also created *designfile*. I have created *readma object* which is named as abf1. >From that readma object, i have to create data object by using *createData*function and also i hav to create model object by using *makemodel* function,

We had been using R1.2.3 "print tip lowess function" as described by Terry Speed's group to normalize microarray data and up until this week the commands we were using were working fine. First, we load our data using arrayname<-read.table("filename", header=T) and then check that the table is OK. We format the data list using setup1<-init.data() and usually get a

This bug is not quite fixed - the example from my original report now = works using R-2.2.1, but plot(Uniform, 6) does not. The bug is due to if (show[6]) { ymx <- max(cook, na.rm =3D TRUE) * 1.025 g <- hatval/(1 - hatval) # Potential division by zero here # plot(g, cook, xlim =3D c(0, max(g)), ylim =3D c(0, ymx),=20 main =3D main, xlab =3D

Hi Guys! Anyone know how can I do this trick? I guess there is a registry value for it. As I noticed winxp try to use smbfs first not cifs. In linux it's easier because you can choose when you mount your shares. Regards, Jax

Hi all, Hoping some one can help me out here. I have a 2200dn laser printer working on a centos 5 server (using webmin for configuration). I have added it via webmin as a samba printer share with permissions to my account. Security is set to "user level" not "share level" (the default). I can access my samba shares fine, download and upload to them. I can also see the

Hello, I've been using various packages in R for a few years now to analyse genomics data but I've just come up with some errors for which I can’t seem to find a solution. Here’s the situation: > source("http://harlequin.jax.org/rmodel/packages/downloadRmodel.R") > getRmodelHuman() also installing the dependency ‘rmodel’ trying URL

Each time a mail message is delivered to a mailbox records like the following appear in /var/log/dovecot.warn: Jul 29 10:02:05 iris dovecot: lmtp(29320, jax at XXX.com): Error: file dict commit: file_dotlock_open(/var/vmail/XXX.com/jax/home/maildir/dovecot-quota) failed: No such file or directory Jul 29 10:02:05 iris dovecot: lmtp(29320, jax at XXX.com): Error: file dict commit:

On 19/01/2019 08:01, Aki Tuomi wrote: > >> On 19 January 2019 at 02:07 Tim Dickson via dovecot < >> dovecot at dovecot.org <mailto:dovecot at dovecot.org>> wrote: >> >> >> i recently upgraded a server from dovecot 2.1 to 2.3 >> unfortunately sieve does not appear to be working. The user scripts have >> not changed, and neither has the

Dear R-users, I have a basic question about how to determine the antilog of a variable. Say I have some number, x, which is a factor of 2 such that x = 2^y. I want to figure out what y is, i.e. I am looking for the antilog base 2 of x. I have found log2 in the Reference Manual. But I am struggling how to get the antilog of that. Any help will be appreciated! > version platform