Displaying 20 results from an estimated 900 matches similar to: "Problem in building a package in R 2.0.0"
2004 Apr 20
2
Creating a package in R 1.9.0
Dear all
I am trying to create a package in R 1.9.0 and I a getting an
error message which I do not understand. (I am using R in Windows
XP and 2000)
For example the following works well in 1.8.1
C:\Program Files\R\rw1081\src\gnuwin32>make pkg-gamlss
---------- Making package gamlss ------------
adding build stamp to DESCRIPTION
installing inst files
installing indices
not zipping
2012 Feb 22
3
gamlss results for EXP and LNO seem to have reversed AIC scores
Hi,
I'm a bit puzzled by the gamlss fitting of exponential and lognormal data.
Gamlss seems to think that exponentially distributed data fits better with a
lognormal distribution, and vice versa.
For example,
X <- rexp(1000)
Gexp <- gamlss(X~1,family=EXP) # X~1 is X tilde 1
GAMLSS-RS iteration 1: Global Deviance = 2037.825
GAMLSS-RS iteration 2: Global Deviance = 2037.825
Glno
2008 May 20
1
"NOTE" warning
Dear all
I am using NAMESPACE in my package but I would like the user to be able
to overwrite four functions:
own.linkfun, own.linkinv, own.mu.eta and own.valideta.
These are used to defined "own" link functions.
Is there any way of doing that without getting the when I am checking
the package?
This is what I am getting:
make.link.gamlss : linkfun: no visible binding for global
2004 Nov 03
1
Building a package under WIN2000 / rw2.0
I have an odd problem in building a package with only R-code in it.
I have a package mainly used by myself which I last build under R
1.9.0.
The operation system is Win2000 5.00.2195, Service Pack 3
When I do:
c:\stat\r\rw2000\bin\Rcmd install --docs=normal --build
--library=c:\stat\R\bxc\library c:\stat\R\bxc\library.sources\xx
then after updating help pages I get:
preparing package xx for
2004 Nov 03
1
Building a package under WIN2000 / rw2.0
I have an odd problem in building a package with only R-code in it.
I have a package mainly used by myself which I last build under R
1.9.0.
The operation system is Win2000 5.00.2195, Service Pack 3
When I do:
c:\stat\r\rw2000\bin\Rcmd install --docs=normal --build
--library=c:\stat\R\bxc\library c:\stat\R\bxc\library.sources\xx
then after updating help pages I get:
preparing package xx for
2008 Mar 25
2
gamlss and glm binomial family
Dear all and Mikis
I have the opportunity to compare fits with the 'classical' glm and
gamlss and no smoother of any kind just the same model formula (both
with the binomial family). I get exactly the same coefficients but
very different residuals, gamlss giving residuals which are extremely
close to 'normal' and glm very far...
How can this be ?
Thanks in advance for
2018 Mar 12
0
Package gamlss used inside foreach() and %dopar% fails to find an object
Hello Mikis:
Thanks a lot, it worked. Could you tell me what the problem was?
Regards,
Nik
----- Original Message -----
From: r-help-request at r-project.org
To: "r-help"
Sent: Sunday, March 11, 2018 6:00:02 AM
Subject: R-help Digest, Vol 181, Issue 11
Send R-help mailing list submissions to
r-help at r-project.org
To subscribe or unsubscribe via the World Wide Web, visit
2008 Sep 02
2
receiving "Error: cannot allocate vector of size 1.5 Gb"
Dear all,
In my attempt to run the below modelling command in R 2.7.0 under windows XP (4GB RAM with /3GB switch set) I receive the following error:
Error: cannot allocate vector of size 1.5 Gb
I have searched a bit and have tried adding: --max-mem-size=3071M to the command line (when set to 3G I get the error that 3072M is too much)
I also run:
> memory.size()
[1] 11.26125
>
2004 Oct 29
1
problem building an R package under Windows XP with calls to NAG C routines
Hello all,
I was able to create R packages under windows XP in the past using the
dynamic NAG C library for windows XP (Mark 6).
Recently, I changed computers and I am now using the static NAG C library
for windows XP (Mark 7) to create a simple R package (called "test") which
simply returns random numbers simulated using repetitive calls to a NAG C
routine (uniform random
2018 Mar 10
0
. Package gamlss used inside foreach() and %dopar% fails to find an object (Nik Tuzov)
Dear Nik
Try the following code
loo_predict.mu <- function(model.obj, input.data) {
yhat <- foreach(i = 1 : nrow(input.data), .packages="gamlss", .combine = rbind) %dopar% {
updated.model.obj <- update(model.obj, data = input.data[-i, ])
predict(updated.model.obj, what = "mu", data = input.data[-i, ],
newdata = input.data[i,], type =
2010 Jun 02
1
Problems using gamlss to model zero-inflated and overdispersed count data: "the global deviance is increasing"
Dear all,
I am using gamlss (Package gamlss version 4.0-0, R version 2.10.1, Windows XP Service Pack 3 on a HP EliteBook) to relate bird counts to habit variables. However, most models fail because “the global deviance is increasing” and I am not sure what causes this behaviour. The dataset consists of counts of birds (duck) and 5 habit variables measured in the field (n= 182). The dependent
2004 Sep 18
1
Rcmd problems and questions, lazyloading
Hola!
I got past the problems I asked about two days ago, thanks. No I am
updating
CRAN package asypow (the daily package check on CRAN gave warnings due to
.Rd problems, fixed).
Now it PASSED Rcmd check
(WindowsXP home edition, rw2000dev, on a new toshiba laptop, if that
matters.)
but then Rcmd build --binary
gives problems:
.
.
.
preparing package asypow for lazy loading
Error in
2004 Nov 17
1
OOP pkg compilation failure
Hi all,
I'm trying to install the OOP package (http://www.omegahat.org/OOP) but
having difficulty in resolving the errors generated during compilation.
Googling doesn't seem to be giving much help.
Can anyone please help. Below is the transcript of what I get from my
command prompt. (I'm running on rw_2.0.0 WIN XP SP2 platform).
Thanks in advance
---transcript----
Microsoft
2004 Nov 15
1
Error whilst building packages
Dear All,
I have been working on building a new version of the Wavethresh package for
some time now. Having build a working version on Linux, I am getting the
following error when checking on Windows:
C:\Rpackages\R\rw2000\bin>Rcmd check wavethresh
* checking for working latex ... OK
* using log directory 'C:/Rpackages/R/rw2000/bin/wavethresh.Rcheck'
* checking for file
2011 Oct 25
2
Building package/DESCRIPTION file not existing?
Hello useRs
I am trying to build a package for personal use and for making easier working with other people but I keep getting the same error message about the DESCRIPTION file not existing.
when trying to install from a source tar.gz file:
Error in .read_description(dfile) :
file 'C:/Users/Propriétaire/AppData/Local/Temp/RtmpHFMONb/R.INSTALL647a3535/mypkg/DESCRIPTION' does not
2016 Mar 07
2
Efectos aleatorios anidados en gamlss
Hola a tod en s,
tengo una duda que la comunidad R me puede ayudar. Estoy trabajando con
gamlss, porque tengo una variable respuesta con valores entre 0 y 1 e
incluidos estos. La distribución que utilizo com gamlss para este caso es
"beta inflated" (Stasinopulos and Rigby 2007. Journal of Statistical
Software 23(7)). El modelo que intento correr es:
m1<-gamlss(Teleosteos ~
2005 Feb 15
2
Making a Package
Hello.
I have what I know to be a simple question, but never having done anything like this it is
pretty tough.
I'm trying to write an R package. I have a collection of functions that I loaded into R and
then used package.skeleton(). After editing everything in the resulting folder, call it
NewPackage, I tried to follow along with some instructions I found for Windows users.
I installed
2018 Mar 09
2
Package gamlss used inside foreach() and %dopar% fails to find an object
Hello all:
Please help me with this "can't find object" issue. I'm trying to get leave-one-out predicted values for Beta-binomial regression.
It may be the gamlss issue because the code seems to work when %do% is used. I have searched for similar issues, but haven't managed to figure it out. This is on Windows 10 platform.
Thanks in advance,
Nik
#
2010 Sep 01
2
documentation to upgrade R-package from 32 to 64bit
Dear all,
I am working with the an R-package named GAMLSS (www.gamlss.com<http://www.gamlss.com>) it is currently only functional under the 32-bit version of R (for windows)
The author of the package has agreed to help me create 64-bit compatible version.
I've been looking through the available R-documentation but cannot find any relevant information on the process.
Any help finding
2018 Mar 09
0
Package gamlss used inside foreach() and %dopar% fails to find an object
If the code you are running in parallel is complicated, maybe foreach is not sophisticated enough to find all the variables you refer to. Maybe use parallel::clusterExport yourself? But be a aware that passing parameters is much safer than directly accessing globals in parallel processing, so this might just be your warning to not do that anyway.
--
Sent from my phone. Please excuse my brevity.