similar to: Run function in BATCH mode?

Hello to everybody! I want to run R in batch mode but it doen't work (Error: syntax error) I've found this in R help: R CMD BATCH [options] infile [outfile] I have tried differents commands: (I have been working in the same directory I have "test.txt" file and "test2.txt" would be the output file) > R CMD BATCH "test.txt" or > R CMD BATCH

A quick newbie question: Can R be run in batch mode from the command line?I'd like to use input files and get output files. If so, where can I find the documentation? help(batch) doesn't help. Thanks! -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Dear R-user, I'm running a certain R script in DOS batch mode. Is there a way to prevent R from saving the workspace once this script is finished? I'm asking this because the resulting .RData file has the size of >70MB. I don't need this file since my script already writes the required output and this makes the whole process very slow (>15 minutes each time) FYI, my script:

So, I'm submitting R 3.0.1 jobs on Ubuntu (13.04) using 'R CMD BATCH --no-save filename.R &' (have an alias set to subr='R CMD BATCH --no-save") and am having a problem of sometimes the process ending without the R commands contained in the batch file actually having finished running. We're running Bayesian models using R2jags jags.parallel and it ends during the

Hello everyine, I am trying to run R in Batch mode in windows, but can't find any help in google. In particular, the only information I get is that I need to have an R.exe file, than I can't find in the bin folder. Can you please provide me with a link or refence on how to run R in batch mode in windows. I can do this very easely in unix, but not in windows.

Hello list Is there a way of identifying from within R whether a script has been source(d) from Rgui.exe or via Rscript.exe in batch mode? For the code I have I use the commandArgs() function to pick up command line args when running in batch mode via Rscript.exe However I like to get the code working manually first using source("MyRCode.r") I'd like to be able to put something at

I realize batch mode is still experimental, but I was hoping there might be a workaround for a problem I am getting. I have been trying to run some tests and I get the below error when I use the --read-batch option to. I can successfully create an initial set of batch files, then a second set based upon a few modified test files from the first batch. When I first run the --read-batch option

Anyone, When attempting to use batch mode to update a second host by executing the .sh file I get: [root@sspfedweb batch]# ./obsession_0000.sh Batch file ./batch/obsession_0000.rsync_flist open error: No such file or directory rsync error: syntax or usage error (code 1) at batch.c(241) Can anyone tell me whatI'm doing wrong. I tar and gzip the batch directory and ftp to the target

Chris, to put things in the right prespective, you should read (if you haven't done so already) the original paper describing the design behind batch mode. The design and implementation of this functionality goes back to a project called the Internet2 Distributed Storage Infrastructure (I2-DSI). As part of that project, the authors created a modified version of rsync (called rsync+)

Whats the reason that using a batch file can't be used with a remote destination? rsync --read-batch=foo /mysrc remote:/dest gives remote destination is not allowed with --read-batch I need to push the same set of files to about 20 servers and because of firewall rules, the 20 servers cannot pull from the central one. Thanks Kimo

Hi everyone, I'm trying to run R in batch mode, and I'm having trouble printing my plots to any file type other than postscript. I know R BATCH doesn't support X11()--is there any way to use R BATCH and write jpeg files? Also: I am running a cgi script to do this--alternatively to batch, is there some kinds of R-CGI interface that might be easier? Thanks! evan

Hi I've been stumbling over a simple issue that undoubtedly has an easy solution. I need to have some way for a user to enter some values into a data frame which R will then work on. I know that data entry should ideally be done otherwise and I should use R only for the computation, but R's data manipulation abilities makes it efficient for me to write the entire code in it. When I ran

Dear all, In R<=1.6.2 I usually used the following code (in DOS prompt) to run R in batch mode C:\documents> Rcmd BATCH myfile.R and I could see the results (including warning messages) in the file myfile.Rout In R.1.7.0 I'm experiencing the followings: (1) even if I type "Rcmd BATCH myfile.R myfile.Rout", no file myfile.Rout is created, but just a "&1" file

Posted on behalf of chenwj <stop4optimal at hotmail.com> who is having trouble posting. hi all, I'm completely new in R, and here are my questions (under windows): 1. i want to run my four R files (pl1.r -- pl4.r) in batch mode. i'd like to write a batch file using Rterm.exe, since i dont get perl installed on my computer. My experimental batch file (*.bat) didnt work, which

Dear all, I'm trying to run a script that requires KernSmooth in BATCH mode but I get an error while loading rgl library that is needed by KernSmooth. Actually I have to run several batch files through a queue of a cluster, so I wouldn't need graphics at all. I installed the latest releases of R (2.6.1) and rgl on my CentOS 4.2 Linux (clone of Red Hat EL) endowed with Rocks 4.2.1 suite

Hello, I came up with this scenario of the use of batch mode while thinking of back-up schemes to use for myself. However, it could be that the last step needed in this scenario is not supported by rsync! Here's the scenario: At one time, /c/home/wer/work and /e/gold had identical content and were really huge (say, 200 GBytes). After some complex, intricate work, Mr. Wer

I have made many different attempts to run a R program in Batch mode. I run a DOS command like: C:\Progra~1\R\rw1061\bin\rterm.exe -q --no-restore --no-save myprogram.R out.txt What happens: 1. DOS Shell starts up well 2. R starts 3. I get the messages: "ARGUMENT 'myprogram.R' __ignored__" "ARGUMENT 'out.txt' __ignored__" 4. R Shell is ready to

Hi, I was trying to use the batch mode "rcmd" under Windows NT. The online help says the right command should be "Rcmd BATCH [options] infile [outfile]". But when I type "rcmd BATCH aaa.r" I got message of "The name specified is not recognized as an internal or external command, operable program or batch file." What is wrong? I know this is a quite

https://bugzilla.samba.org/show_bug.cgi?id=5201 Summary: Rsync lets user corrupt dest by applying non-inplace batch in inplace mode Product: rsync Version: 3.0.0 Platform: Other OS/Version: Linux Status: NEW Severity: normal Priority: P3 Component: core AssignedTo:

Hi guys, First of all, sorry to send this one here on the centos ml. I know it's kind of off-topic, but the xen-users list seems a dead end, I was hoping some of you guys are experienced in this. I have a problem with a xen 3.4.2 on Centos 5 x86_64 installation, I need to see the total/used/available memory of dom0 when using xentop, however in batch mode it doesn't seem to work. If I use