similar to: R CMD check testing environment

I have code and documentation that don't match, but R CMD check didn't flag it. in mspath.R mspath <- function(formula, # formula with observed Markov states ~ observation times (required) qmatrix, # matrix of 1s and 0s with indices of allowed transitions (diagonal is ignored) (required) misc = FALSE, ematrix = NULL, # matrix

I get the error undefined symbol: Rf_rownamesgets when I try to load my package, which include C++ code that calls that function. This is particularly strange since the code also calls Rf_classgets, and it loaded OK with just that. Can anyone tell me what's going on? For the record, I worked around this with the general purpose attribute setting commands and R_RowNamesSymbol. I

The cran2deb archives target testing. I just pulled a package from them onto a stable system; the library loaded but said > library(akima) Warning message: package 'akima' was built under R version 2.10.0 Are this and other packages likely to work correctly with different R's (2.7 in the case of stable)? How well are they likely to work with a backported R? The R version would

I'm having trouble getting correct help output in some circumstances for a package I've created. Though this is not an issue with the current R, I would like my package to work with previous ones as well. I'm looking for suggestions about how I could rework my .Rd file so that it will work with prior R's. In particular, R 2.7 is in the latest stable release of Debian, so I'd

Function/file names are hypothetical. Say I have written myfunction.R, which calls myfunction.c via .C("myfunction", ...). I've compiled successfully myfunction.c via R CMD SHLIB myfunction.c in the terminal. Then, in the R console: dyn.load("myfunction.so") source("myfunction.R") test <- myfunction() # works fine So everything is in order, myfunction works

Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is:

I've attached a script I wrote that pulls all the setGeneric definitions out of a set of R files and puts them in a separate file, default allGenerics.R. I thought it might help others who find themselves in a similar situation. The "situation" was that I had to change the order in which files in my package were parsed; the scheme in which the generic definition is in the

I have a single data file inputs.RData that contains 3 objects. I generated an Rd page for each object using prompt(). When I run R CMD check I get * checking for code/documentation mismatches ... WARNING Warning in utils::data(list = al, envir = data_env) : data set 'gold' not found (gold is one of the objects). This appears to be coming from the codocData function defined in

The help page for INSTALL says, in part, Some package sources contain a `configure' script that can be passed arguments or variables via the option `--configure-args' and `--configure-vars', respectively, if necessary. The latter is useful in particular if libraries or header files needed for the package are in non-system directories. In this case, one can

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

Folks: sessionInfo() R version 2.15.0 (2012-03-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] datasets splines grid tcltk stats graphics grDevices [8] utils

I'm trying to get ready to submit a package to CRAN, but in order for the package to install on OS X, I need to temporarily set the environment variable NOAWT=1. I put 'export NOAWT=1' in my package's 'configure' script, and 'R CMD INSTALL MyPackage' returns with no errors. However when I do 'R CMD CHECK MyPackage', the installation test fails, because

I'm trying to get ready to submit a package to CRAN, but in order for the package to install on OS X, I need to temporarily set the environment variable NOAWT=1. I put 'export NOAWT=1' in my package's 'configure' script, and 'R CMD INSTALL MyPackage' returns with no errors. However when I do 'R CMD CHECK MyPackage', the installation test fails, because

Dear R-helpers, www.statistik.lmu.de/~*leisch*/*Sweave*/*Sweave*-Rnews-2003-2.pdf says that R CMD build creates the pdf from a .Rnw file. But when I do R CMD build followed by R CMD check it gives me a warning that there is a vignette without a PDF. My query is : when R CMD build works it creates a pdf in the doc subdirectory of the directory returned by system.file(package = mypackage) and not

Just a word to mention that I have lost 2 hours yesterday to find out why R refused to use a function from a package calling C-code. R invariably answered that the C code was not in the load table (something like this). I have tried everything (or nearly) to solve my problem knowing that this same package used to work on my computer at the university. Finally, I found out that running the same

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

Using R Version 1.6.2 (2003-01-10) I did R CMD check. The package I was checking includes an .Rd file with an example. My package test directory included a file foo-Ex.R whose first line was WARNING: ignoring environment value of R_HOME There are some problems with this: 1. R_HOME is not set. 2. The line is a syntax error, causing the test to fail. Furthermore, I got this warning message a

Hi all, R CMD check does not work for me under Windows. This is the error R CMD check mypackage.tar.gz * checking for working latex ... OK tar: and: Not found in archive tar: Settings/miguez/ ... /00_pkg_src: Not found in archive tar: Error exit delayed from previous errors Error: cannot untar mypackage.tar.gz I know tar is available because R CMD build created the tarball in the first place

Hello, All: How can I obtain the location of an example data file in a package during "R CMD check"? I want to include sample raw data files in a package and have them read by a function in the package. It occurs to me to put such a file in "\inst\rawdata" and have examples find the data using something like "system.file('rawdata',

Dear all, I'm trying to create my own package by following for instance http://epub.ub.uni-muenchen.de/6175/2/tr036.pdf In step 6 (page 19) it says that the command 'R CMD build <mypackage>' should result in a tar.gz file. However, after running the command I end up with a tar file only (no gz extension). I also get the following warnings in the command prompt C:\Program