similar to: permax for windows?

I'm new to this site so I hope this isn't too naive a problem. I'm trying to use the permax function with a data frame containing gene expression measurements taken from 79 microarray experiments with >3000 genes per array. The data contains missing values and every time I use permax with the data frame I get the error: NA/NaN/Inf in foreign function call (arg 1) Could anyone

Hello r-bugs, I am running openSuse 11.0, with my new Intel 8500 (Penryn) C2D, and I want to use icc and ifort. I was able to get a working Goto BLAS, following Dr. Goto's instructions. That seems to work OK with gcc and gfortran. I get about 10% faster computations by using -O3 rather than -O2. I get faster results with Goto BLAS rather than the R BLAS. Now I want to make icc and ifort

Hello, I have a problem, I can't install the package 'mgu74av2cdf'. I downloaded the zip file, yet when asked the R console to install it from a zip file, I got the answer: "Error in file(file, "r") : unable to open connection In addition: Warning messages: 1: error -1 in extracting from zip file 2: cannot open file `mgu74av2cdf/DESCRIPTION'

Hello: I am trying to work with a couple of microarray data sets, using platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 1 minor 8.1 year 2003 month 11 day 21 language R In the shortcut for invoking R I have set

Full_Name: Girish Zambre Version: 1.7.0 OS: Win2000 Submission from: (NULL) (66.7.170.2) I just started looking at and trying R. The problem could be external to R, but I really don't know. It reads 'The instruction at "0x004412f0" referenced memory a "0x0095e40c". the memory could not be "read" ' I get this after installing modules

Hi All: Package TSERIES is stated to depend on MVA. However, there is no MVA package to be found under the list of package sources. Best wishes, ANDREW tseries: Package for time series analysis Package for time series analysis with emphasis on non-linear and non-stationary modelling Version: 0.7-6 Depends: ts, mva, quadprog Date: 2001-08-27 Author: Compiled by Adrian

I've recently setup a distributed/replicated cluster and have had an issue with seeing the directories on the cluster. Also, a df -h only shows data from one of the three bricks. The strange behavior doesn't end there. If I log into the 'primary' server as root, then do an ls on the client, the directories appear. However, df -h is still incorrect. I'm not sure exactly

I am making some changes to the permax library (so that it will accept NA's). This function performs a permutation analysis to identify discriminating attributes distinguishing two groups of observations. It takes the form (at its most simplistic): permax(data, ig1) where ig1 is one group of interest. The other group (if not specified) is assumed to be the remaining observations, namely,

Hello, I am trying to compile R-2.9.1 on Mac OS-X 10.4 using --enable-R-shlib. I am not comfortable with Mac/Linux environments and trying to follow the instructions from CRAN site to every detail. The Mac OS did not have a gcc (gcc -version did not work). So I did the following: ## For gcc 4.2 and Fortran 4.2.4 Compilers Download gcc-4.2-5566-darwin8-all.tar.gz from

Howdy, I'm experiencing a segmentation fault when trying to load mclust.so from mclust-1.1-4. I'm using R-1.3.1 on RedHat 6.2, and `gcc --version` reports "egcs-2.91.66". Any ideas? -Andy Package install: > install.packages("mclust") [stuff omitted] Installing source package `mclust'

Hi all, So, MCJIT is working with vmkit, that's great. However, I need to retrieve the GCModuleInfo and the MachineCodeEmitter used during the compilation process. And I don't know how I should proceed? I'm trying to understand how they are preserved with the old jit, but I have to say that I'm a little bit lost because I haven't a global view of the code... So, any help would

Dear List, I tested the example in the reposTools vignette: library(reposTools); Loading required package: tools genRepos("Test Repository", "http://biowww.dfci.harvard.edu/~jgentry/","newRepos"); Error in rep.int(colnames(x), nr) : unimplemented type 'NULL' in 'rep' Could someone help me out with this one? I'd appreciate all help.... I am

Hello, I am a newbie to the lattice package in R, and I'm trying to make a plot using the xyplot function. I have repeated measures data (2 conditions) for two different groups of subjects (teens and adults). So far, I've made a basic graph using xyplot(y ~x, group=subnum, data=mydata, type="b"). Now I would like to make all the teens' lines one color and the adults'

In the "filled bands" part of xYplot of the Hmisc package, is there a way to have multiple bands with multiple lines? or does it just allow one for now? So I had an example bit ago had a made up line and CI, now if I wanted to make a second line with a CI filled in can I put them on the same plot? x<-seq(1,10,1) y<-seq(1,10,1) ci<-y*.10 ciupper<-y+ci

Hi, I have the solution to my problem :). And the llvm gc infrastructure can work with the current MCJIT without any change (good news). I will explain what I have done to find the garbage collector metadata generated by llvm with MCJIT, I'm pretty sure that it could help someone. And it's very easy. You just have to activate a static gcprinter for the assembly. A very good example is

Hi! I have now a more precise question, I hope that this time, someone will be able to help me :) I'm now able to find the gc meta data. To find this data, I simply register a GCMetadataPrinter (just like during an AOT compilation). A GCMetadataprinter is called at the end of the compilation of a module after having assigned the slots to the live roots. I have almost everything except that

Hello I am working on radio tracking data, with a short programme someone gave me and ... which should, supposedly, work ... In this programme, there is the function : getareahr(kern, levels = 95). But i cannot find any 'getareahr' in R ... could anyone help me? thanks! Agn??s

Full_Name: Nicolas Simonis Version: 2.6.1 OS: windows Submission from: (NULL) (155.52.10.223) Very funny bug : > 0.6<0.6 [1] FALSE > 0.6<0.4+0.2 [1] TRUE control : > 0.7<0.7 [1] FALSE > 0.7<0.4+0.3 [1] FALSE With R 2.6.1 windows. it's not doing it with R 2.3.1 linux...

Hi. I have a problem with the default behavior of sample(), which performs sample(1:x) when x is a single value. This behavior is well explained in ?sample. However, this behavior is annoying when the number of value is not predictable. Would it be possible to add an argument that desactivates this and perform the sampling on a single value ? Examples: > sample(10, size = 1, replace = FALSE)

Hi. I have a problem with the default behavior of seq(), which gives the argument "from" when the argument length.out = 1. This behavior is annoying when the number of value determine in length.out is not predictable. Would it be possible to add an argument that propose the median/mean, i.e. (from + to) / 2 when length.out = 1 ? Examples: > seq(from = 1, to = 11, length.out=1) #