similar to: Three-way ANOVA?

Hi, I have a problem with a package I have developed in that functions do not get loaded due to older versions of the functions being in the .GlobalEnv? fetched from .Rdata files stored from previous saved workspaces. I need to be able to fix this somehow when I load the package. I do not want to mess up the search order to fix the problem. How I got myself into this mess is that I started

Just now I again had occasion to want nested describe lists in a documentation file. I found that the bug which I reported on 18 October, 2001 still persists. I checked on the bug report at the R web page, and found that the notes say ``Not a problem in R 1.4.0 (2001-12-08)''. Well, it's still a problem for me --- using R 1.4.1. (Details: platform sparc-sun-solaris2.7 arch

R CMD check tells me * checking R code for possible problems ... NOTE agexact.fit.rds: ... may be used in an incorrect context: ?optim(init, agfitfn, ...)? Warning: <anonymous>: ... may be used in an incorrect context: ?optim(init, agfitfn, ...)? Can anyone tell me what this message means? My searches haven't turned up anything useful. This is with R 2.7 and 2.9. The message

Hello, I am working multiple simulated data sets with missing values, I would like to store these data sets in either tab delimited format for .csv format with missing values marked as NaN's instead of NA's. I read the import/export document which mentions that write.table command converts NaN's to NA. Is there any other way I can store the NaN's. I tried the write syntax

This may be an FAQ, but a (perfunctory) search failed to turn it up. Suppose I have a function foo(...){<something>} and I want to obtain, inside foo, the names of items comprising the ``...''. E.g. if I call foo(melvin,clyde,irving) I want to be able to loop through the ``...'' and successively obtain the text strings "melvin", "clyde", and

On 5/11/19 3:41 AM, Hadley Wickham wrote: > For what it's worth, I don't think this strategy can work in general, > because a class might have attributes that depend on its data/contents > (e.g. https://vctrs.r-lib.org/articles/s3-vector.html#cached-sum). I > don't think these are particularly common in practice, but it's > dangerous to assume that you can restore a

On 04/11/2019 4:40 p.m., Pages, Herve wrote: > Hi Rolf, > > On 11/4/19 12:28, Rolf Turner wrote: >> >> On 5/11/19 3:41 AM, Hadley Wickham wrote: >> >>> For what it's worth, I don't think this strategy can work in general, >>> because a class might have attributes that depend on its data/contents >>> (e.g. >>>

Hi, How to save an R object for example a matrix or vector and not all objects created in a session (which is usually performed by save.image or q("yes"))? Best, Carol [[alternative HTML version deleted]]

If one specifies new options in a package, using the options() function, where does/should one document these new options? E.g. suppose that I put the line options(melvin=42) in a file zzz.R in the R directory of the package source, where the package contains functions foo(), bar(), clyde(), and irving() which all query options("melvin") and take some action based on the value of

Dear R list members I am trying to improve a boxplot with 2 data sets. I run somethinkg like boxplot(data1 ~ month, add=F, col = "red", ...) boxplot(data2 ~ month, add=T, col = "blue", ...) The problem is that the data from February are missing for data2, so R think that must take little more space between the data classes in data 2 and then both data gropus are not aligned.

Dear forum, I would like to use the kernel2d or spkernel2d in the Splancs-package, but it does not recognize my polygon data. "Error in kernel2d(as.points(ptsbin), polygonprov, h0 = 2, nx = 100, : " is the error message. Invalid poly argument The data are defined as follows: polgonprov<-list(x=polyprov$X, y=polyprov$Y) with X and Y coordinates in the Lambert1972

Hi, Suppose I have the following tabular data: 1729_at | TRADD | TNFRSF1A-associated via death domain | protein-coding 1773_at | FNTB | farnesyltransferase, CAAX box, beta | protein-coding 177_at | PLD1 | phospholipase D1, phosphatidylcholine-specific | protein-coding What is the right separator used for read.table function? I tried this: dat <-

I am trying to build a function in a context where the environment concept would appear to be useful. But I'm a bit foggy about this concept and would appreciate some pointers and advice. Basically the function I'm building, say foo(x,t), is a function of two variables). Depending on the value of t, foo will return one of the values f1(x), f2(x), ..., fk(x), where each of f1, ..., fk is

I had an error message while running a macro from Yudi Pawitan's web site: > source("ex2-13.r") Error in parse(file, n, text, prompt) : syntax error on line 2 Inspecting ex2-13.r I found that the error was generated by another source() command. Clearly R does not like nested source()s, which is fair enough when you think about it. Still it's something that you might want

I recently tried to write a new method for "[", to be applied to data frames, so that the object returned would retain (all) attributes of the columns, including attributes that my code had created. I thrashed around for quite a while, and then got some help from Rui Barradas who showed me how to do it, in the following manner: `[.myclass` <- function(x, i, j, drop = if

I'm experiencing a new and annoying phenomenon which seems to consist of an unfortunate interaction between R-1.7.0 and netscape version 7. When I invoke help.start(), a netscape window duly appears with the browser pointed at the file .../R/doc/html/index.html as one would hope and expect. However if I then ask for help on a function, e.g. > help(glm) the help does NOT get displayed

Hello all, I should probably know this by now... Anyway: I have a large matrix (dim(data) is 3000 18000). In each element are one of the following character strings "0/0", "1/1", "1/2", "2/2". I wanted to replace "0/0" with NA and the other three with 0,1,2 respectively. To accomplish just the first of these four steps I did this:

Greetings to all -- I am having a silly problem that I just can't solve. Someone has given me an .RData file will hundreds of data frames. Each data frame has a column named ResultValue, currently character when it should be numeric. I want to loop through all of the data frames to change the variable to numeric, but I cannot figure out how to do it. My best guess was along the lines of:

I'm getting an anomalous result from using the itemize command in a documentation file. My usage is something like \itemize{ \item Melvin \item Irving \item Clyde \item Fred } (This was place inside ``\details{ }''.) (Previously I had enclosed the text following each item in braces but that gave even worse results.) The package appears to install OK; i.e. the command R

Hello List, i have been agonizing over this for days, any reply would be greatly appreciated! Situation:___________________________________ My original dataset is a .csv dataset (w/ 2M records) with 4 variables: job_id (Primary key, won't be used for analysis, just used for join tables), sector_id (categorical variable, for 19 industry sectors), sqft (con't variable for square