similar to: installing mgcv (Knoppix/Debian unstable)

Dear All, I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same

I can't compile R-alpha on AMD 64. Rather than include a 1400 line script I have put it on the web http://www.stat.umn.edu/~charlie/typescript.txt way down near the bottom it fails building lapack.so gcc -shared -L/usr/local/lib64 -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld:

How can one specify multiple extra flags to R CMD SHLIB? The example in R-exts section 5.5 MAKEFLAGS="CFLAGS=-O3" R CMD SHLIB *.c works for a single flag, but when I try MAKEFLAGS="CFLAGS=-g -O2 -Wall" R CMD SHLIB *.c only the first flag is used and the rest seem to be ignored (version 2.3.1, Mac OS X) -thomas Thomas Lumley Assoc. Professor, Biostatistics

Hi I just upgraded my debian/stable to R 2.7.1 via apt-get install r-base r-base-core r-base-dev, and then began to update.packages() > update.packages(lib.loc="/usr/local/lib/R/site-library") > update.packages(lib.loc="/usr/lib/R/library") but I get: .... * Installing *source* package 'mgcv' ... ** libs gcc -std=gnu99 -I/usr/share/R/include -fpic -g

Dear all, OS: x86_64-suse-linux 9.2 CPU: Intel(R) Xeon(TM) CPU 3.20GHz R-version: R-2.1.0 I've started using a new Linux server, upgraded at the same time to R-2.1.0 (see above) and have problems with some elementary analysis that ran without a problem on my previous configuration. anova.glm gives the following error: Error in La.chol2inv(x, size) : lapack routines cannot be loaded This

Hi All, I'm still having significantly difficulty getting the quantreg library running in R. I'm running R on MEPIS using the debs created by Dirk Eddelbuettel and placed in apt testing. When I try to install quantreg using the install.packages() function it fails with: /usr/bin/ld: cannot find -lblas-3 Dirk was nice enough to send me a .deb for quantreg which installs without

Dear All, Under Debian GNU/Linux La.svd (with method = "dgesdd") sometimes gives the error "Error in La.svd(data, nu = 0, nv = min(nrow, ncol), method = "dgesdd") : LAPACK routine DGESDD gave error code -12" It seems not to depend on the data per se, but on the relationship between numbers of rows and columns. For example, if the number of columns is 100,

Agustin, posted on R-help. I think the problem is one of the debian/ubuntu package 'r-cran-robustbase' and its setup or (missing?) dependencies. I can confirm Agustin's problem, working on Ubuntu 8.04.2 (8.04 is a "LTS" = long time support version). apt-get install r-cran-robustbase works fine, but when trying to load the package, there's a DLL - dependency on

Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object

Hi, After loading R 4.0.0 on Ubuntu 20.04. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()'

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

R developers, I am trying to understand how symbols are resolved, so that I can configure a package that I contributed to, and so that I can provide guidance to (linux / OSX) users of the package. To be concrete, my package uses the LAPACK Fortran symbol zsysv. This is not in libRlapack, but is defined on my system in the library /usr/lib64/liblapack.so. * I suspect that the reason the symbol is

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Dear all, I have a problem to build a package on Windows XP while there is no problem on Linux. The Makefile is something like: ########### LIBNAME=cts PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) OBJS=file1.o ... file20.o -llapack -lblas $(LIBNAME)$(SHLIB_EXT): $(OBJS) $(SHLIB_LD) $(SHLIB_LDFLAGS) -o $@ $(OBJS) $(FLIBS) clean: @rm -f *.o *.$(SHLIB_EXT) realclean: clean

Un saludo R-inómanos: Les escribo porque tengo una duda que no he podido resolver por mis medios y actuales conocimientos. He querido instalar el paquete "ade4" en R (OP linux-ubuntu) pero no he podido por un error que según entiendo está relacionado con una librería. Me permito mostrarles el texto que me aparece luego de tratar de instalarlo desde los repositorios: >

Hi, I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, but octave3.0-headers depends on libblas-dev. The two blas packages seem to conflict, so r-base-dev and octave3.0-headers can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading

Il 30/04/20 03:39, Dirk Eddelbuettel ha scritto: > > On 30 April 2020 at 03:26, Samuele Carcagno wrote: > | I'm not familiar with the internals of `viridisLite`, so I'm not sure > | I'd be able to help there. I could open a bug report on the > | `viridisLite` repo and see if the author has suggestions on how to > | narrow down the issue. > > It would help if

Hi, I'm relatively new to R on Ubuntu (moving from Windows), and I'm trying to get GotoBLAS2 working. I installed (from a CRAN mirror) the pre-built binaries of R (which, as far as I know, is compiled as a shared library) on Ubuntu 10.10 using apt-get install r-base r-base-dev I successfully built GotoBLAS2 from source, copied the library to /usr/lib and created s symbolic link from

dear debian-R group: I am using the stock ubuntu binary R 3.0.1 for ubuntu raring but on cinnamon mint olivia 15. I read dirk's gcbd paper from a couple of years ago. it suggests that stock blas is pretty bad compared to the four main alternatives. of course, dirk also maintains the binaries for debian/ubuntu R, so he probably knows the answer off hand. I installed libatlas3-base

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb