Displaying 20 results from an estimated 300 matches similar to: "Problem with mclust surfacePlot function"
2000 Dec 07
0
mclust was Re: R or Splus
> > However... I could become an R convert if I'm told it's
> >
> > a) mind-bogglingly simple to install on Win Nt
> > there are firm limits to my geek credentials
> > b) can handle cluster analysis with 2000 records (mclust, preferred,
> > although I'd take kmeans if nec'y). Splus 5.0 on the
> > Manchester Cray has been falling
2006 Oct 06
0
new version of mclust available
A new version of mclust is now available as a contributed package on CRAN.
The associated manual is located at
http://www.stat.washington.edu/www/research/reports/2006/tr504.pdf
The main feature in terms of new functionality is the option to include
a Bayesian prior in the mixture model for regularization.
The older version is still available mclust02 for those who need
backward compatibility.
2004 Jun 07
2
MCLUST Covariance Parameterization.
Hello all (especially MCLUS users).
I'm trying to make use of the MCLUST package by C. Fraley and A. Raftery. My problem is trying to figure out how the (model) identifier (e.g, EII, VII, VVI, etc.) relates to the covariance matrix. The parameterization of the covariance matrix makes use of the method of decomposition in Banfield and Rraftery (1993) and Fraley and Raftery (2002) where
2005 Oct 22
0
package mclust: cdens, EMclust?
Dear Knowledgeable R Community Members,
Please excuse my ignorance -- I apologize in advance
if this is an easy question, but I am a bit stumped
and could use a little guidance regarding parameters
in 2 functions in the "mclust" package.
--------------------
PROBLEM DESCRIPTION
--------------------
I have a finite mixture modeling problem -- for
example, a 2-component gaussian
2002 Feb 14
1
Subsets in mclust
Dear group,
I want to use the mclust package on large data, and therefore I want to use
a subset in the initial clustering phase. From help(mclust):
k: If `k' is specified, the hierarchical clustering phase will
use a sample of size `k' of the data in the initial
hierarchical clustering phase. The default is to use the
entire data set.
m2 is a
2004 Jul 22
1
Disriminant analysis with lda (MASS)
Hello,
Does the "lda" function (package MASS) perform or can it perform classic
two-group Fisher discriminant analysis?
R-version: 1.9.1, MASS package (latest available)
Thank you,
Borut Rajer
2005 Jan 06
2
Segmentation fault while using Mclust function of mclust library in R-2.0.1
Hi, all;
I got an unusual error while using mclust library 2.1-7 on R 2.0.1.
When I tried to run Mclust(rnorm(100)), I got segmentation fault error.
Does anyone know what causes this problem?
I came across the same problem even when I tried to run the example shown in
Mclust help using iris data.
Thanks in advance,
Tae-Hoon Chung
--------------------------------------------------
Tae-Hoon Chung
2005 Apr 07
3
4D Plot ??
Tried to post this last night, but it doesn't seem to have appeared.
Using R 2.0.1 on Windows XP + SP2.
I am traveling, away from my usual references. I'm trying to make a
4-dimensional plot: a levelplot with overlaid contours, with different
response variables represented by (1) colors on the levelplot and (2)
the contour lines.
First try was filled.contour + contour but the key
2009 Dec 04
0
flexmix and mclust help
Hello,
I'm trying out flexmix and mclust for the first time on some univariate data
which is typically best described as lognormal, but can sometimes be gamma
distributed as well. I first tried using EM on mclust assuming the data was
lognormally distributed and could only get it to work in "E" mode, i.e. the
equal variance mode. I could never get it to work on "V" mode [
2005 Jul 19
1
Library mclust in 64bit compiled R
Hi, All;
I tried to use library mclust in 64-bit compiled R 2.0.1 but failed.
Installation went smoothly without any warning or error. However, when I
tried to use them with the following simple code, it crashed.
Library(mclust)
Dat <- c(rnorm(20, mean=0, sd=0.2), rnorm(30, mean=1, sd=0.2))
Ind <- Mclust(dat, 1, 5)$classification
cbind(Dat, Ind)
The error message was:
2008 Jun 12
0
using MCLUST package to estimate a poisson-gaussian process
Hi All,
I am using em() function to estimate a poisson-gaussian process from a
univariate one dimension time series, but not sure how to do. In the help
manual, it specify that in "pro" of the argument "parameter", if the model
includes a Poisson term for noise, there should be one more mixing
proportion than the number of Gaussian components. But in the example, the
parameter
2003 Nov 15
0
r 1.7.1, MacOS 9.2.2, mclust 2.0-2 (Update), lapackLib
I am new to r and mclust.
I have version 1.7.1 of r, precompiled for Classic Mac OS (I am running 9.2.2 on a PowerBook G4).
I downloaded the precompiled version 2.0-2 of mclust for Classic MacOS.
It appears (from the example I was using below) that I need a library called lapackLib. There does not appear to be a precompiled version at CRAN. There is a makefile for lapackLib, to use with MPW.
2008 Jul 21
1
Mclust - which cluster is each observation in?
I'm trying to test a method of identifying individuals (birds) based on
measured data (their calls).
I have test data from known individual birds, and I am using the Mclust
package to see if the program can correctly identify which calls come from
different birds.
So far, mclust has correctly ID'd the number of birds in the test data set
(i.e., the correct # of clusters). However I
2003 Nov 15
0
r 1.7.1, MacOS 9.2.2, mclust 2.0-2
To Whom It May Concern:
I am new to r and mclust, so this may be a silly question. It has
also been a lot of years since I have used unix regularly.
I have version 1.7.1 of r, precompiled for Classic Mac OS (I am
running 9.2.2 on a PowerBook G4).
I downloaded the precompiled version 2.0-2 of mclust for Classic MacOS.
The implementation of r appears to be functioning properly (various
2009 Dec 07
1
Sweave and license message when loading mclust package
When loading mclust, it shows a license agreement message. This
message shows up in my document when I use Sweave. I did the
following:
<<echo=FALSE,include=FALSE>>=
library(mclust)
@
Is this a problem with mclust, Sweave or with me? How can it be fixed?
Thanks for any suggestions!
Titus
2007 May 13
0
Mclust node labels
Hi,
A quick question from a social scientist new to R -
how do I get coordProj / plot.Mclust to label the
nodes by row names? Using "identify" only gives me the
row numbers... Thanks.
-- Bobby
2007 May 13
0
Mclust help
Hi, quick question from a social scientist new to R:
how do I add labels/row names to the nodes in
coordProj / plot.Mclust plots? Apologies if this is a
silly question... Thanks.
-- Bobby
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Comedy with an Edge to see what's on, when.
2012 Nov 26
0
cluster analysis error - mclust package
I am following instructions online for cluster analysis using the mclust
package, and keep getting errors.
http://www.statmethods.net/advstats/cluster.html
These are the instructions (there is no sample dataset unfortunately):
# Model Based Clustering
library(mclust)
fit <- Mclust(mydata)
plot(fit, mydata) # plot results
print(fit) # display the best model
This is what I did and the error I
2007 Jun 28
0
prior covariance in Mclust
Hello,
I'm trying to use Mclust to fit a Gaussian Mixture Model to a
mulitdimensional data set.
Because of the specific source of my data, I know that all components
have the same variance and that the covariance between dimensions is
zero (modelname=VII).
Furthermore, I have a reliable estimate of the variance of the components.
I want to to use this estimate as a prior in mclust, hoping
2007 Oct 17
0
question about mclust and prior probabilities
I'm sorry, this is probably a very simple question. I am relatively
new to R and am having difficulty understanding how to use the mclust
options to change the prior probabilities for a mixture model.
I am dealing with a situation where I have 2 groups of data and it is
known that the sample sizes are different in the population. I want to
incorporate the probability associated with