similar to: Matrix efficiency in 1.9.0 vs 1.8.1

For a Monte Carlo study I need to extract from an lme model the estimated standard deviation of a random effect and store it in a vector. If I do a print() or summary() on the model, the number I need is displayed in the Console [it's the 0.1590195 in the output below] >print(fit) >Linear mixed-effects model fit by maximum likelihood > Data: datag2 > Log-likelihood:

Hello, i have a little problem with R and i hope you can help me. I want to use splines to estimate a function but i want to force the interpolation to be monotone. Is this possible with R ? Thank you, Rémi. --------------------------------- [[alternative HTML version deleted]]

Hello, Does anybody know if there is somewhere in R a function to calculate the Lyapunov exponent in a time series? Thanks, Philippe Grosjean .......................................................<??}))><.... ) ) ) ) ) ( ( ( ( ( Prof. Philippe Grosjean \ ___ ) \/ECO\ ( Numerical Ecology of Aquatic Systems /\___/ ) Mons-Hainaut University, Pentagone / ___ /( 8, Av. du

Dear all, Has anyone worked on coding for calculating Lyapunov Exponent for a time series data? or any package is available for computing Lyapunov? Please advice and many thanks in advance. Catherine X Wang

R-users -- I would be interested in tools in R to fit the following gam model: logit(p) = a + f(x1) + f(x2) + f(x1,x2), where f(x1,x2) defines a surface. I have looked into the mgcv library, but it seems only to fit models of the form: logit(p) = a + f(x1) + f(x2) Any ideas? Cheers, Dan =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= Dan Powers Associate Professor,

R help list subscribers, I am a new user of R. I am attempting to use R to explore a set of equations specifying the dynamics of a three trophic level food chain. I have put together this code for the function that is to be evaluted by LSODA. My equations Rprime, Cprime, and Pprime are meant to describe the actual equation of the derivative. When I run LSODA, I do not get the output that

I installed R project 1.9.0 on Windows XP. The installation went well. Then, I rebooted. Next, I clicked the icon under Programs in the Start menu and received this error, "Fatal Error: Invalid HOMEDRIVE". I clicked OK to the error message. The program does not start. I went to a DOS prompt and did "echo %HOMEDRIVE%" and it returned "C:". This letter is a valid

Dear R-helpers, I have found a slightly annoying problem when trying to plot lines on graphs. I first created my data using tapply, thus:- y1=as.vector(fit1$coef$random$id) x1=tapply(o1,id,median,na.rm=T) x2=tapply(o2,id,median,na.rm=T) #then I plot the data, thus:- plot(x1[x2==0],y[x2==0]) #if I now try to fit the linear regression, R 'hangs up'

I'm using Rprofile file on R1.9.0 startup and inside I'm loading a personal Library which uses winMenuAdd() and I've got this error : Error in eval(expr, envir, enclos) : couldn't find function "winMenuAdd" I hadn't this problem with others R versions. What Can I do now to avoid that? I'm using R1.9.0 under Win98. [[alternative HTML version deleted]]

I am wondering why my function works fine in R1.7.1 and R1.8.1 but not in R1.9.0. I thought it's an environment related problem but I can't solve it. >data weta jd 1 1 4 2 2 13 3 2 13 4 6 4 5 1 3 6 1 7 7 2 10 8 3 10 9 1 8 10 1 8 11 3 6 12 1 9 13 1 5 14 1 1 15 3 13 16 1 2 17 2 2 18 7 11 19 1 3 20 5 4

Hello, I have R1.9.0 under Windows XP. My program plots several plots using x11() par(cex = 0.75) ...... x11() par(cex = 0.75) ...... x11() par(cex = 0.75) ...... x11() par(cex = 0.75) ...... Sometimes, one of them generates a small frame only with title area "R graphics: Device X (ACTIVE)". The message in the console window is Error in plot.new() : Figure margins too large

Hi! Pinned the problem with plot down a bit. I can reproduce it with only 2 lines of R on my Windows XP machine. (today reinstalled R1.9.0) and Bioconductor packages updated. Can anyone reproduce this behaviour? (I am surely reproducing this error only if library(ROC) is loaded at the beginning of the session.) z:\devel\Paper2004\patrick3>Rterm R : Copyright 2004, The R Foundation for

This is R1.9.0, windows XP I run across the following: It is admittedly silly, but it shouldn't segfault: test <- list(y=1:100, x=rep(NaN, 100)) approx(test, xout=rep(NaN, 10)) Bombs! Kjetil Halvorsen

Dear all, One of my students have installed R1.9.0 on windows, and gets the fatal error 'invalid HOMEDRIVE' Can anyone help her/me out on that one? Thanks in advance Søren Højsgaard [[alternative HTML version deleted]]

Hi, I found the same question in the mailing list already a few months ago - but there was no answer to it - so I'll try it again Could somebody help me to solve this following problem? I just begin to learn how to connect my Oracle database with R. > library(DBI) > library(ROracle) Warning message: DLL attempted to change FPU control word from 8001f to 9001f >

Hi there, I am using the windows version R1.9.0. I used to be a Splus user. When I used Splus to try some computation, I like to put all my codes in a script file and check them line by line. This way I can keep track of all my thinking and it's very easy to make correction at some earlier steps. Now I can not find this script-file style in R. The software itself doesn't seem to have

I noticed that, in R1.9.0 beta where the old 'base' package has been split into 4, '.First' gets executed with just the new 'base' loaded, before 'stats' 'utils' and 'graphics' are available. The NEWS file does warn that this will be the case for .Rprofile, but doesn't mention .First. Is this actually the intended behaviour where .First is

Dear R-gang, I have a question about handling underscores in names in R 1.8.1 and 1.9.0. I recently installed 1.9.0 on a machine and found that many codes no longer work as a result of the changed behavior in make.names. I have numerous data files that have dashes, periods and underscores in the header row. I've got numerous R codes that read those files with read.table and read.csv and

Hi! >library(cluster) In this lib a function called silhoutte.default is defined than on the R prompt it type >silhouette.default Error: Object "silhouette.default" not found R1.9.0 The same error are at R1.8.1 And I knew that a function silhoutte.default are present. But the same piece of code works in R1.6.2 ??? Eryk Dipl. bio-chem. Eryk Witold Wolski @

Dear R-devel This one seems a bit arcane for R-help. I very often use R to call routines written in Delphi (son of Pascal), doing "persistent" memory allocation within Delphi. That is, I start R and load the Delphi DLL; then I use .C to call a Delphi routine which allocates a piece of memory X and returns to R a pointer to X; then I do some more stuff in R; then I call another Delphi