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I am using "heatmap" to cluster genes in microarrays. It works fine with 100~200 genes. But when I draw a heatmap with 600 genes, I can't read a clustering tree well. Maybe I will be able to read it by dividing it into several subtrees using a function such as "subtree". I found "subtree" in Splus, but not in R. Is there a similar function in R? Or, without it,

I go back and forth between windows and linux, and find myself running into problem with line endings. Is there a way to control the line ending conversion when writing files, such as write and cat? More explicitly I want to be able to write files with LF line endings rather than CRLF line ending on windows; and CRLF line endings instead of LF on linux, and I want to be able to control when the

Hi there, I've looked through the very helpful advice about adding fitted lines to plots in the r-help archive, and can't find a post where someone has offered a solution for my specific problem. I need to plot logistic regression fits from three differently-sized data subsets on a plot of the entire dataset. A description and code are below: I have an unbalanced dataset

Dear all, When running R CMD check on Windows XP to test my package I get the following warning message: "* checking line endings in C/C++/Fortran sources/headers ... WARNING Found the following sources/headers with CR or CRLF line endings: src/xpsDict.h" The problem is that this file is created by the compiler AUTOMATICALLY during the compilation process, and since the file is

Right, my understanding is that files that specifically need CRLF should say so via .gitattributes somewhere. autocrlf=false ought to work if your Windows editor doesn’t (or can be persuaded not to) introduce CRLFs. I’ve observed that the Visual Studio editor will detect the line-ending style of the file you’re editing, and imitate it. This works great until you create a new file. 😝 So I’ve

I do have full access to that directory. I have the bbHist package in c:/PROGRA~1/R/rw2011/library/bbHist directory. Then under the library directory I did check and build. Here's what I got: $ R CMD check bbHist * checking for working latex ... OK * using log directory 'c:/progra~1/r/rw2011/library/bbHist.Rcheck' * using R version 2.1.1, 2005-06-20 * checking for file

Hi. I've made a strange observation. When having Dovecot (at least) with maildir and moving (via IMAP) mail received by some client (Evolution 3.4) into it the following happens: Regardless of whether the mail was originally(!) set with CRLF or LF (i.e. when I use netcat to submit the plain SMTP to the relaying MTA). When the client (Evolution) had received the mail via POP3 before moving

I am trying someone's example to build a R package, but I get some errors, Can someone help me to figure it out? thanks, * using log directory '/home/aiminy/myrpackages/roots.Rcheck' * using R version 2.6.1 (2007-11-26) * checking for file 'roots/DESCRIPTION' ... OK * this is package 'roots' version '0.1-1' * checking package dependencies ... OK * checking if

Full_Name: Hem Nalini Morzaria Luna Version: 2.00.00 OS: Windows XP Submission from: (NULL) (128.104.98.229) When using the plot(), when no previous graphics devices are open, the text in the GUI disappears. Even if I close the graphics device I can't see the cursor. But it is still there, because I can type another plot() command. I had to close R and open it again for the GUI to return to

Hi all, I've installed CentOS 5.2 i386 (with all updates) on notebook Fujutsu Siemens Esprimo U9200 Suspending works normal, but after resuming my system crashes. There are no messages about that in /var/log/messages, only after reboot system I see in gnome: " Resume Problem Your system did not appear to resume correctly from Suspend/Hibernate. This may be a driver problem or a

I've been using the mono-repo [ http://llvm.org/docs/GettingStarted.html#for-developers-to-work-with-a-git-monorepo] and this morning I ran into an issue where I am unable to submit using the mono repo. I traced this down to the fact that many files explicitly have the property svn:eol-style set to native. On the git side, we have core.autocrlf=false, which means that git will checkout

Hello All, R 2.11.1 Windows XP, 32-bit Help says that default is eol=''\n''. To me, that represents Linefeed (LF) >From Help: eol the character(s) to print at the end of each line (row). For example, eol="\r\n" will produce Windows'' line endings on a Unix-alike OS, and eol="\r" will produce files as expected by Mac OS Excel 2004. I would

Hi, While running R CMD build on one of the Bioc packages, I'm getting the following error message * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files Can't call method "print" on an undefined value at /home/sfalcon/arch/x86_64/R-2.3/bin/build line 646. The pacakge has CRLF line endings in source files. >

Timo, thanks for writing and releasing Dovecot. I've recently discovered it and have been very impressed at the speed and balance between flexibility and simplicity. I had to make a packet-trace to be sure that encryption with OpenSSL was working correctly, since it all 'just worked' first time without complex configuration, which I don't think I've ever seen before ;-) LDAP

Hello @all, i have three samba dc's each running with Version 4.7 on raspbian strech On one oft hem i have now this problem and i don't know why? I'm not sure what caused the problem. because it worked before. root at samba01:~# /usr/sbin/samba_dnsupdate --help Traceback (most recent call last): File "/usr/sbin/samba_dnsupdate", line 52, in <module>

Dear helpers, I'm using R version 2.8.0. Suppose that I have a small data set like below. [,1] [,2] [,3] [,4] a 1 1 0 0 b 0 1 1 0 c 1 1 1 0 d 0 1 1 1 First, I'd like to find row sum of values uniquely present in each row, but only sequentially from the top row, meaning that if the value is shown in the above row(s) already, the

http://bugzilla.mindrot.org/show_bug.cgi?id=1157 Summary: ssh-keygen doesn't handle DOS line breaks Product: Portable OpenSSH Version: 3.8.1p1 Platform: All URL: http://openssh.org/txt/draft-ietf-secsh-publickeyfile- 02.txt OS/Version: All Status: NEW Severity: normal

I moved my own llvm tree out of the way and tried to get a fresh copy from cvs and build everything from scratch... and it worked! apart from one little problem, a file was moved and should be removed from the project files -- here is a patch. There is a small problem with submitting patches for the .vcproj files - VS saves them with CRLF line endings but the CVS versions appear to have only

I'm trying to typeset at simple crosstable with the Hmisc latex function. And I have two problems. 1. How do I make all columns the same width? The Latex function seems very unwilling to break the 'cgroup' labels and the factor level labels. Please have look at this screenshot that shows my problem: >> http://hem.passagen.se/stpe9096/table.png So, how can I make sure that the

In case people on the list don't know it, A Vorbis tester (who's email I've lost! If you're on the list, speak up!) is maintaining a vorbis audio quality test page: http://hem.passagen.se/ingets1/vorbis.htm He's doing us the great service of hunting down samples that break Vorbis (so we don't have to :-) In any case, it turns out that the trumpets in the dr4 sample