similar to: cbind question

Hello, I basically want to use R-help, and post some problems which I am facing. The Ref is a well known Genome Biology paper "Bioconductor: open software development for computational biology and bioinformatics" by Robert C Gentleman et al., 2004. Generating Heatmaps till Fig2 is working so I think esetSel is not the problem.. However, for generating the Figure 3, for GO annotations the

I am running R 2.0.0, GOstats 1.1.1 and GO 1.7.0, and when I use the function GOHyperG, I have the following error: w1<-as.list(hgu95av2LOCUSID) w2<-unique(unlist(w1)) set.seed(123) myLL<-sample(w2,100) xx <- GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with

Hello, Given a vector of characters, or factors, denoting the date in the following way: 28/03/2000, is there a method of 1) Computing the earliest of these dates; 2) Using this as a base, then converting all the other dates into merely the number of days after this minimum date Many thanks Richard Hillary

I have been trying to download the latest version to my Macbook X version 10.6.8 from my institutions mirror http://cran.cnr.Berkeley.edu Usually is only takes minutes, but regardless of the browser or where I connect to the internet I have been unable to download because it would take upwards 2 days according to the download dialogue box. I'd really like to get the newest version to run some

Hillary, Richard M wrote: > Morning chaps, I have a little question for your capable minds... Say > I have an observed and predicted set of quants (in my case, length > frequencies by year and age/length), is there a way to use lattice > plots to plot the observed and predicted data together, panel by panel? > Obrigado/gracias (thankyou in Galego is?...) > Rich Hi Richard, If

Hillary, Richard M wrote: > Morning chaps, I have a little question for your capable minds... Say > I have an observed and predicted set of quants (in my case, length > frequencies by year and age/length), is there a way to use lattice > plots to plot the observed and predicted data together, panel by panel? > Obrigado/gracias (thankyou in Galego is?...) > Rich Hi Richard, If

Hi- I'm trying to make my PCA (princomp) colored. In my csv excel sheet, I have the first column numbered according to the groupings I want to assign to the PCA. I've played around with trying to set this first column as the color vector, but haven't had any luck. Any suggestions? Thanks, Hillary [[alternative HTML version deleted]]

Hello, I am trying to call R from Perl running on Windows 2000. I have looked through the previous posts regarding running R from Perl and all have referred to the RSPerl package at Omegahat. Unfortunately the documentation for this package specifically states that it only works in Unix at the moment. Does anyone else have any suggestions about the best way to do this in the Windows

On Mon, December 19, 2016 12:41 am, Sorin Srbu wrote: >> -----Original Message----- >> From: CentOS [mailto:centos-bounces at centos.org] On Behalf Of >> geo.inbox.ignored >> Sent: den 16 december 2016 15:03 >> To: centos at centos.org >> Subject: Re: [CentOS] OT: Blank mails from this list >> >> >> >> On 12/16/2016 07:29 AM, Valeri

I'm having problems creating an axis label for a plot. y_label = expression(paste(plain('CPUE '),plain('(fish'),plain('x'),plain('h'^{-1}),plain(')'))) I'd like to replace the "x" with an interpunct symbol (dot). Any suggestions how to do this? Thanks in advance. [[alternative HTML version deleted]]

I am trying to use R to do a weighted GAM with PA (presence/random) as the response variable (Y, which is a 0 or a 1) and ASPECT (values go from 0-3340), DEM (from 1500-3300), HLI (from 0-5566), PLAN (from -3 to 3), PROF (from -3 to 3), SLOPE (from 100-500) and TRI (from 0-51) as predictor variables (Xs). I need to weight each observation by its WO value (from 0.18 to 0.98). I have specified the

OS: CentOS 5.1 x86. Hi, after applying the latest X.Org updates, applications have stopped running with an error message: "The program 'multiget' received an X Window System error. This probably reflects a bug in the program. The error was 'BadAlloc (insufficient resources for operation)'. (Details: serial 214 error_code 11 request_code 146 minor_code 5) (Note to

On 12/16/2016 07:29 AM, Valeri Galtsev wrote: > On Fri, December 16, 2016 4:15 am, geo.inbox.ignored wrote: <<>> >> btw; do you know Valeri Galtsev <galtsev at kicp.uchicago.edu? her department >> is near what you had marked on chigo map. > > I'm a boy ;-) (yes, some names are weird) > }} aware that Valeri is 'both ways'. 8=) did not know which

Hi, I have the following data frame: > print(mydatframe) __DATAFRAME__ V1 V2 V3 1 1007_s_at DDR1 discoidin domain receptor tyrosine kinase 1 2 1053_at RFC2 replication factor C (activator 1) 2, 40kDa 3 117_at HSPA6 heat shock 70kDa protein 6 (HSP70B') __END__ Is there a way to create a hash with V2 as Key and V3 as its value? - Gundala Viswanath Jakarta - Indonesia

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Hi. Sorry if this is the wrong list - a pointer to the right would be appreciated. I have a number of Ogg files, that have a VBR bitrate of approx. 256 kbps. I have bought a portabel Ogg player (iRiver iFP 795) that unfortunately only support bitrates up to approx. 225 kbps. So my question is, if there is a tool to change the bitrate down to e.g. 220 kbps. I know I can do this with sox, or

Thanks very much, understood. so, it seems, upgrading selected packages is probably going to be fine except where the compatibility matters where it would break all kinds of things. Something of such nature of request would need to be internally tested by simply updating the selected packages, test the applications previously running on 6.3 w/ these few selected 6.8 packages updates. It seems,

Hi! My Samba 4 system seems to be running reasonably well, but... I am getting the following error: TSIG error with servier: tsig verify failure Faied nsupdate: 2 yadda, yadda. This is from the command *samba_dnsupdate --verbose --all-names *All I can find on the web is time synchronization problems. Any ideas? I can send a full transcript if it would help.. Thanks! -jimc

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## Hi, I'm having trouble understanding how the cbind function decides what method to apply to its arguments. Easy cut and paste code below. > > > > ## create two columns > c1 <- c("A","A","B","B") > c2 <- 1:4 > > ## cbind outputs a matrix with elements that are characters, seems reasonable > out <-