Displaying 20 results from an estimated 1000 matches similar to: "Problems with environments, I think.."
2003 Nov 04
2
real eigenvectors
Hello list,
Sorry, these questions are not directly linked to R.
If I consider an indefinte real matrix, I would like to know if the
symmetry of the matrix is sufficient to say that their eigenvectors are real ?
And what is the conditions to ensure that eigenvectors are real in the case
of an asymmetric matrix (if some conditions exist)?
Thanks in Advance,
St?phane DRAY
2004 Feb 23
2
orthonormalization with weights
Hello List,
I would like to orthonormalize vectors contained in a matrix X taking into
account row weights (matrix diagonal D). ie, I want to obtain Z=XA with
t(Z)%*%D%*%Z=diag(1)
I can do the Gram-Schmidt orthogonalization with subsequent weighted
regressions. I know that in the case of uniform weights, qr can do the
trick. I wonder if there is a way to do it in the case of non uniform
2004 Sep 20
4
Multiple operations on list
Hello,
suppose I have a list with matrices:
a=list(x1=matrix(rnorm(10),5,2),x2=matrix(rnorm(10),5,2),x3=matrix(rnorm(10),5,2))
I want to compute for all combination of xi and xj (x1,x2 x1,x3 and x2,x3)
a value.
This value is given for the pair x1,x2 by trace(x1%*%t(x1)%*%x2%*%t(x2)) /
trace(x1%*%t(x1))*trace(x2%*%t(x2))
I know that product matrices t(xi)%*%xi can be obtained by:
2004 Aug 11
0
Calling Lapack From C code
Hello List,
I have create a small package with C code. In the C code, I call Fortran
routines of Lapack. Here is the call in the C function:
F77_CALL(dgesvd)(&jobu, &jobvt,&size, &size,A, &size,
D,U,&size,V,&size,&work1, &lwork,&error);
In the src directory, I have a Makevars File with:
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
And in the
2004 Oct 01
1
cumsum over a list or an array
Hello list,
my question is related to svd of a matrix:
b=matrix(rnorm(50),10,5)
mysvd=svd(b)
I would like to compute each xi where xi = di* ui %*% t(vi). I do it by :
xlist=sapply(1:ncol(b), function(x1,y)
y$d[x1]*y$u[,x1]%*%t(y$v[,x1]),y=mysvd,simplify=F) # result is a list
xarray=array(sapply(1:ncol(b), function(x1,y)
y$d[x1]*y$u[,x1]%*%t(y$v[,x1]),y=mysvd),c(nrow(b),ncol(b),ncol(b))) #
2004 Mar 31
3
scan seems to modify the data
Hello list,
I have used scan function to import data into R. I have done some analysis
and find strange results. I have found my problem : when importing data
with scan, this can slightly modify the data :
> write(c(0.251,3.399,-0.481,0.266),"essai.txt")
> scan("essai.txt")
Read 4 items
[1] 0.251 3.399 -0.481 0.266
> print(scan("essai.txt"),17)
Read
2004 Jun 29
2
binding rows from different matrices
Hello list,
I have 3 matrices with same dimension :
> veca=matrix(1:25,5,5)
> vecb=matrix(letters[1:25],5,5)
> vecc=matrix(LETTERS[1:25],5,5)
I would like to obtain a new matrix composed by alternating rows of these
different matrices (row 1 of mat 1, row 1 of mat 2, row 1 of mat 3, row 2
of mat 1.....)
I have found a solution to do it but it is not very pretty and I wonder if
I
2004 Jul 06
2
Generate a matrix Q satisfying t(Q)%*%Q=Z and XQ=W
Hello,
I have a question that is not directly related to R ... but I try to do it
in R ;-) :
I would like to generate a matrix Q satisfying (for a given Z, X and W) the
two following conditions:
t(Q)%*%Q=Z (1)
XQ=W (2)
where:
Q is m rows and r columns
X is p rows and m columns
D is p rows and r columns
C is r rows and r columns
with m>p,r
e.g:
m=6,
p=2
r=3
2004 Oct 22
4
Evaluate a function for various value of parameters
Hello list,
I have a problem ... and do not know how to solve it.
I would like create a function that estimate the quality of the fit of
different functions with different values of parameters.
This problem is related to the following one:
I would like to create a function "evaluatemyfunction" which evaluate a
function f for different values of parameters. For instance, if
2004 Mar 24
7
binding vectors or matrix using their names
Hello list,
I have two vectors x and x2:
x=runif(10)
x2=runif(10)
and one vectors with their names :
my.names=c("x","x2")
I would like to cbind these two vectors using their names contained in the
vector my.names.
I can create a string with comma
ncomma=paste(my.names,collapse=",")
and now, I just need a function to transform this string into a adequate
1999 Nov 24
0
problem with multiple figure postscript file
Hello all!
I'm a newcomer to R, so please bear with me. My problem is the
following:
I'm trying to use R to do some geostatistics stuff (mostly kriging), and
am having trouble printing a multiple figure. When I create a single
figure (one image/contour command), it works fine. The instant I try to
create a multiple figure file, I start getting postscript errors. I'm
using the
2004 Feb 25
2
writing polygons/segments to shapefiles (.shp) or other ArCGIS compatible file
I am not sure a previous e-mail reached the list (no mail aknowledgement from R-boundle etc.). The question was how to write polygon
or segment coordinates into a shapefile set or any other ArcGIS supported format. The library shapefiles seems to do something but
the documentation is a bit beyond of my mind.... and I cannot get the meaning of the functions write**** and its application to the
case
2005 Oct 11
2
Sweave and Rnews
Hello list,
I am writing a paper for Rnews. I use Sweave to do it. I did not find
information about writing a paper for Rnews using Sweave and have some
questions:
- Is there a problem to use the environment 'Sinput' in the place of
'example' or 'smallexample'. It works fine but perhaps there are some
technical/editorial problems ?
- I have some long lines of code in
2002 Apr 15
1
nested anova not giving expected results
Hello all. This may be a trivially simple question to answer, but I'm a little
bit stumped with respect to the calculation of the F statistics in nested
anovas in R. If I understand correctly, the F statistic for the
among-subgroups but within groups hypothesis is calculated as
MS_subgroups/MS_error, while the F statistic for the factor is calculated as
MS_factor/MS_subgroups (I'm
2005 Oct 26
1
sweave/help
Hello list,
I would like to know if it is possible to get output of help(foo) with
Sweave.
If I insert ?foo in a chunk, the console give me the help but no output
is obtained in the tex file.
Perhaps something to do with options ?
Thanks in advance !
--
St??phane DRAY (dray at biomserv.univ-lyon1.fr )
Laboratoire BBE-CNRS-UMR-5558, Univ. C. Bernard - Lyon I
43, Bd du 11 Novembre 1918, 69622
2005 Nov 11
1
A 'sweave' strange problem !!!
Hello list,
I have found a problem (bug?) with Sweave. I hope that someone could
help me.
Try this little example :
\documentclass[a4paper]{article}
\title{toto}
\author{toto}
\begin{document}
\maketitle
<<ni1, fig=T, eval=TRUE, echo=TRUE, debug=TRUE, results=verbatim,
include =FALSE, width=7, height=7>>=
a<-rnorm(1)+1
a
plot(1:10)
@
patati
<<ni2, fig=F, eval=TRUE,
2004 Jan 01
1
ade4
Dear All,
I am using the scatter.dudi finction in the 'ade4' package to produce
correspondence analysis (nice) plots.
I do not seem to figure out how to plot the raw coordinates only -- or column
coordinates only. I would appreciate any help in doing that.
Here is the example I am following -- from the package.
data(banque)
> banque.acm <- dudi.acm(banque, scann = FALSE, nf =
2004 Mar 16
2
bray-curtis?
Does R have a function to calculate Bray-Curtis distance measures, which is
probably one of the most frequently used and recommended dissimilarity
measures in ecology? It isn't mentioned in dist().
2004 Mar 22
1
Débutant R
Bonjour à tous,
Je débute dans l'utilisation de R, et suis à la recherche de toute piste me permettant l'introduction à ce logiciel.
J'ai pour le moment la fiche d'Emmanuel Paradis: "R pour les débutants", mais j'aimerais savoir où je peut trouver
d'autres documentations notamment pour le traitement statistique de données (Anova, modèle linéaire et
modèle
2004 Apr 29
1
problem with pca
Hello
I have some kind of problem with R.
I want to do a pca (I work on R and ade4 library) but R doesn't wan to
realize my pca because of my data:
I have some binary variable (presence/absence of birds, hole, vegetals...)
and metric variable (cliff 's size...) and each time I have an error message
because of the mix of the 2 type of variable.
So, what can I do?
Famille SALMON