Displaying 20 results from an estimated 10000 matches similar to: "Status of Rmpi--Good with tweaks"
2004 Mar 23
2
Status of Rmpi
Rmpi is not currently available on CRAN, and I don't think it has been
for a few months. It is available at
http://www.stats.uwo.ca/faculty/yu/Rmpi/
Does anyone know its current status?
A few months ago I corresponded with the author, who noted some build
problems (specifically on Debian) were the hang up, and seemed to be
working on it. I wasn't able to get it to work then (on a
2008 Apr 08
1
Rmpi 0.5-6 : error spawning process
Hi,
I am using a cluster with LAM 7.1.3/MPI 2 and R 2.6.0.
Rmpi version 0.5-5 is working very well.
Now I have tested "Rmpi 0.5-6". During spawning the Rslaves I get an
error: MPI_Error_string: error spawning process
> sessionInfo()
R version 2.6.0 (2007-10-03)
x86_64-unknown-linux-gnu
locale:
2007 Apr 24
1
Problem installing Rmpi with lam on SGI SLES9
Hi,
I've been trying here to install Rmpi on an SGI IA-64 machine with 64
processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and
lam-mpi 7.1.3. While I've read of similar problems on this list, I
think I've got an entirely new set of error messages to contribute
(see below). I'm not sure what the actual error is and what the @gprel
relocation message is about. Any help
2007 Mar 28
4
Rmpi and OpenMPI ?
Has anybody tried to use Rmpi with the OpenMPI library instead of LAM/MPI?
LAM appears to be somewhat hardcoded in the Rmpi setup. Before I start to
experiment with changing this, has anybody else tried Rmpi with non-LAM MPI
implementations?
Dirk
--
Hell, there are no rules here - we're trying to accomplish something.
-- Thomas A. Edison
2005 Jun 17
0
Rmpi installation over MPICH
This is a rather obscure question, I realize. I have written to the
package author but have not heard back as of yet. I have read the
README in the package, as well, but it didn't give me enough detail to
diagnose the problems that I am having. (I did edit out the LAM-MPI
check in zzz.R.in.)
I am working to install Rmpi on top of MPICH on a beowulf cluster.
Below is the output of the
2007 Oct 08
0
another try with Rmpi on Linux
Dear R People:
Here are my latest attempts for Rmpi:
This is the list of locations for mpi.h:
/home/faculty/hodgess/mpich2-1.0.5p4/src/include/mpi.h
/home/faculty/hodgess/include/mpi.h
/home/faculty/hodgess/lam-7.1.4/romio/adio/sgi/mpi3.1/mpi.h
/home/faculty/hodgess/lam-7.1.4/share/include/mpi.h
/usr/src/linux-2.4.21-20.EL/drivers/addon/fusion_20505/lsi/mpi.h
2005 Dec 20
2
Install Rmpi on Fedora with mpich2 installed.
Hi, everyone,
I want to install Rmpi on a cluster with Fedora linux. It already installed mpich2, but not lam-mpi. I installed R-2.2.0 on it already.
And I got error as below:
* Installing *source* package 'Rmpi' ...
Try to find mpi.h ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are
2005 Oct 27
2
installing Rmpi
Hello,
I've installed R on my RHEL3 cluster and I am trying to get Rmpi to
work properly.
R is installed using the following
./configure --prefix=/home/apps/R-2.2.0
I installed snow using
R CMD INSTALL /home/apps/snow
And finaly Rmpi
R CMD INSTALL /home/apps/Rmpi --configure-args=--with-mpi=/path/to/lam
There were no errors or warnings upon installation. However when i
perform the test
2006 Dec 07
0
Rmpi help
Hi team,
I am beginning on R and I try to install Rmpi library and I have problems, I have installed LAM-MPI on Rocks;
[rcnavarro at hpc-cip ~]$ laminfo
LAM/MPI: 7.1.1
Prefix: /opt/lam/gnu
Architecture: x86_64-unknown-linux-gnu
Configured by: root
Configured on: Wed Oct 19 18:12:25 EDT 2005
Configure host: rocks-156.sdsc.edu
Memory
2007 Sep 28
1
CHAR () and Rmpi
Hi. I am the maintainer of Rmpi package. Now I have a problem regarding
the change of CHAR () in R 2.6.0. According to R 2.6.0 NEWS:
*******
CHAR() now returns (const char *) since CHARSXPs should no
longer be modified in place. This change allows compilers to
warn or error about improper modification. Thanks to Herve
Pages for the suggestion.
*******
Unfortunately this
2006 Oct 09
2
Installing Rmpi on 64-bit Linux Athlon
Hello,
We have recently added a 64-bit 2 x Dual-Core Athlon server running Red
Hat Enterprise Linux AS release 3 to allow for processing of large data
sets (>4GB) in R. To integrate this server into our Linux cluster, I
have been trying (unsuccessfully) to use Rmpi/lam-mpi to parallel
process some of our scripts. While I have successfully compiled R 2.4.0
and lam-mpi 7.1.2 on this server using
2007 Feb 19
1
Installing Rmpi on FC5 with lam
After several trial and error attempts, I managed to install the Rmpi
package without error on my Linux machine, running Fedora 5.
I installed lam-7.1.2, lam-devel-7.1.2 and R-2.4.1, R-devel-2.4.1
The Package Rmpi_5.0-3.tar.gz, I installed once from within R and once
from the command line to make sure, I link the right libraries:
R CMD INSTALL Rmpi_5.0-3.tar.gz
2008 Jul 24
0
Problems with Rmpi and LAM 7.1.4
Guys,
I'm running LAM 7.1.4 and R/Rmpi on a SuSE 9.3 box.
When I do
>library(Rmpi)
The whole thing crashes with the following message:
-----------------------------------------------------------------------------
No SSI RPI modules said that they were available to run.
This should only happen if you request an MPI thread level that is too
high (for example, none of the SSI RPI modules
2007 Oct 15
1
Rmpi building
I am trying to build Rmpi on Suse 10.2 linux. While I would like to use
the RPM version of liblam-7.1.2, I have not been able to do so. It
seems that Rmpi makes some pretty strong assumptions when trying to
guess the MPI version. Has anyone successfully built Rmpi against
lam-7.1.2 recently using R-2.6.0? If so, can you give some pointers
about where the libraries and header files need to be
2009 Mar 27
0
Installing Rmpi on Centos 5.2
I am trying to install the R package "Rmpi" which needs libmpi. I've
installed openmpi and lam in Centos 5.2:
[root at rab45-1 /]# rpm -qv openmpi
openmpi-1.2.5-5.el5
openmpi-1.2.5-5.el5
[root at rab45-1 /]# rpm -qv lam
lam-7.1.2-14.el5
lam-7.1.2-14.el5
I'm using this to install Rmpi:
R CMD INSTALL /home/rick/Rmpi_0.5-7.tar.gz
--with-mpi=/usr/lib64/lam/include
But I get the
2008 Jan 16
3
Rmpi on Linux x86_64 GNU/Linux
I'm having trouble with R CMD INSTALL Rmpi_0.5-5.tar.gz
--configure-args=~/lam
lam is is installed locally.
lamboot -d (or lamboot-d and also recon) works. make -k check from the
lamtest suite passes all tests.
Is this is problem with the -fPIC compiler as in the message? Should it
be modified in the Makefile?
Any help or comments are appreciated, thanks.
* Installing to library
2011 Mar 14
1
Installing Rmpi on hpc
Hi,
I was trying to install the package Rmpi on a hpc cluster running SGE. The
command, and the sessionInfo() is as follows:
===========================================
> install.packages("Rmpi",dependencies=TRUE)
also installing the dependency ‘rsprng’
trying URL '
http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz'
Content type
2007 Jul 23
1
Rmpi installation error
Hello everybody,
I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the
following error:
* Installing *source* package 'Rmpi' ...
Try to find mpi.h ...
Found in /usr/local/mpich-1.2.7p1/include
Try to find libmpi or libmpich ...
Found libmpich in /usr/local/mpich-1.2.7p1/lib
Try to find liblam ...
checking for main in -llam... no
liblam not found. Probably not LAM-MPI
2007 Oct 04
1
Rmpi_0.5-4 and OpenMPI questions
Many thanks to Dr Yu for updating Rmpi for R 2.6.0, and for starting to make
the changes to support Open MPI.
I have just built the updated Debian package of Rmpi (i.e. r-cran-rmpi) under
R 2.6.0 but I cannot convince myself yet whether it works or not. Simple
tests work. E.g. on my Debian testing box, with Rmpi installed directly
using Open Mpi 1.2.3-2 (from Debian) and using 'r' from
2006 Jan 16
0
Snow Rmpi Heterogeneous Cluster
Dear R-users,
I am trying to make Snow and Rmpi working on an heterogenous cluster of
linux computers. The master computer is built on a 64 bit architecture
whereas all nodes are built on a 32 bit architecture. LAM/MPI was
installed successfully on all machine. LAM boots correctly on the master
computer and it recognizes all nodes defined in the lamhosts file.
However, when starting R,