similar to: Fwd: osx/fink: cannot do "R INSTALL" (library mixup)

Hello friends. I've just switched from linux to osx, and I'm liking it, except now that I'm getting down to brass tacks, and needing to install some R packages, I'm at a roadblock. I'm hoping someone can help. My R is installed from a .dmg, and resides as follows: $ which R /usr/local/bin/R The problem is that I cannot build packages. For example, see the below (which

Hi. I'm not having any luck installing the binary for the new Macintosh OS called "Tiger". I get error messages as below. Can anyone offer me some advice? (PS: I checked the bug list first but a search on "Tiger" turned up nothing so I hope it's OK to post here.) Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared

I have a package that contains some fortran code. It has been built in the past, but now I have an updated Apple OSX 10.4 (Tiger) system, and it fails. The behaviour is as follows $ R CMD CHECK oce ,,, gcc-3.3 -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o oce.so geoddist.o ocecp.o rho.o spice.o strho.o theta.o tsrho.o -

Q: Has anyone implemented cartograms [**] in R? A search on the R site turned up https://stat.ethz.ch/pipermail/r-sig-geo/2005-December/000698.html which led to http://www.okada.jp.org/RWiki/index.php?cmd=read&page=Rmap%A4%F2%BB% C8%A4%C3%A4%BF%C3%CF%BF%DE%C9%BD%BC%A8&word=Rmap#content_1_35 which has (one form of) a cartogram as a PNG, but which doesn't seem to have code. (The

Hello. I'm having difficulties getting R_alloc() to work. The test platform is a 64-bit Mac running R 2.2.1 installed via a .dmg file obtained from the R site. Details are given below, in a level of detail that I hope is appropriate. My eye was particularly drawn to line #2 in the gdb 'where' output, but line #1 seems sensible so I may just be displaying my ignorance by

QUESTION: how should I do a linear regression in which there are errors in x as well as y? SUPPLEMENT: I've seen folks approach this problem by computing eigenvectors of the covariance matrix, and that makes sense to me. But I'm wondering if this has a "pedigree" (i.e. if it makes sense to folks on this list, and if it's something that has been published, so I can refer to

Please excuse a question from somebody who is new to R. I'm using R version 0.90.1 (from an RPM package for redhat-linux) and am running into difficulties with code that looks like: nls(~ relative.error(..., x, y),data,start=list(...)) I've taken this code, which attempts to do a nonlinear curve-fit with weighted deviations, from section 10.3 of the book 'Statistical models in

I have never used -> but I noticed at http://github.com/jiho/r-utils/blob/master/beamer_colors.R that some people do. In fact, the above-named code has a sort of elegance about it (except for the use of "=" for assignment...). To my eye, -> calls to mind a type of assignment that is meant to stand out. For example, perhaps it would make sense to use -> to assign

First, let me join the chorus of praise for R. (Hey, isn't somebody going to analyse all these praise emails in some statistical way?) I'm writing to point out an error in the file permissions in the linux/redhat version. (I'm using R-base-1.0.0-1.i386.rpm, by the way.) The permissions in /usr/lib/R/doc/html aren't correct, since 'function.html' and

I've been using (and loving) R for quite a while now, but I have to admit that something simple is still stumping me. The question is how I can control the box within which a plot is drawn, in cases where I'm controlling the aspect ratio with the "asp" argument. The problem comes up in pdf() and png() output formats, but also with interactive windows, and so I'll

Q: When R does 'plot()' in a context that yields boxplots, is there a way to force it to draw something even if there are only 1 or two data in the category? I'd like for it to draw the data, perhaps using the outlier symbols. My code is (*** marks the line in question) is the following, for R-1.0.0: d <- read.table("nserc-results-pgsb", header=FALSE,

I'm new to R (and to S) and am wondering about code from pages 72 and 83 of MASS (Venables+Ripley, 3rd edition), to draw an envelope on a QQ plot. Copying from the book, I've got: #... code whose gist is "a.fit <- nls(..." num.points <- length(resid(a.fit)) qqnorm(residuals(a.fit)) # illustrate data-model residuals qqline(residuals(a.fit)) samp <-

Hi, I am trying to run the "schools" example in the rbugs library (running winbugs in linux via wine-20041201) but keep getting the following error. Note I have tested wine and winbugs to confirm that both are operational. Error in runBugs(bugs, script.file, n.chains, workingDir, useWine, wine, : BUGS stopped before getting to coda. The command I'm using is:

Using R 1.8.1, and the negative binomial glm implemented in MASS, the default when using anova and a chi-square test is to divide the deviance by the estimated dispersion. Using my UNIX version of S-plus (v 3.4), and the same MASS functions, the deviances are *not* divided by the estimated dispersion. Firstly, I'm wondering if anyone can enlighten about the correct procedure (I thought

Trevor, Thanks for your reply. That doesnot help Any other suggestions? Anamika On Tue, Aug 10, 2010 at 11:58 AM, Trevor Davies <tdavies@mathstat.dal.ca>wrote: > I think you need to load is R2WinBUGS again. > > require(R2WinBUGS) > > Trevor > > > Hi All: > > > > I am getting an error while trying to plot in R2Winbugs > > > > *Error in

Hello everybody. I've been experimenting with mapply(). Does anyone else have problems with: R> mapply(rep,times=1:4, MoreArgs=42) (I get a seg fault). robin R> R.version _ platform powerpc-apple-darwin6.6 arch powerpc os darwin6.6 system powerpc, darwin6.6 status beta major 1 minor 8.0 year 2003 month 10 day 02 language R >

Hi, I'm wondering if it is possible to install a package for R 2.0 on R 1.9.1 on Mac OS X? I'm getting this error which seems to be known issue: library("quantreg") Error in firstlib(which.lib.loc, package) : couldn't find function "lazyLoad" In addition: Warning message: package quantreg was built under R version 2.0.1 Error in

Is there an R function that automatically writes all input and output to a file? I would at least like it to log all the commands I enter, and to preferably also write the standard output to the file as well as to the screen. (The ideal would be to write the input to one file and both the input and output to another file.) I tried R2HTML for this, but I could not get it to work consistently. I am

--KsGdsel6WgEHnImy Content-Type: text/plain; charset=iso-8859-1; format=flowed Content-Disposition: inline Content-Transfer-Encoding: 8bit Hi, people. Wandering in R archives, and seeing the message attached below, I noticed that: mapply(rep,times=1:4, MoreArgs=42) still segfaults on R 2.2.0, and thought I should be a good citizen and report it, even if I do not have an actual problem

In Mac OS X native version: The R shell wrapper (bin/R) overrides default library search path with DYLD_LIBRARY_PATH and adds (among others) /usr/X11R6/lib. This causes problems when modules need (directly or indirectly) libraries from Apple's frameworks which are masked by X11. Examples for such packages are SJava and RGL. SJava needs JavaVM which in turn loads OpenGL framework. RGL