Displaying 20 results from an estimated 2000 matches similar to: "Installing ncdf package"
2010 Mar 16
2
Problem in installing ncdf package
Dear R communities
Could you please help me with the problem I encounter while trying to install the ncdf package?
download.packages("ncdf", "/home/user/soft/R/library/")
cd /home/user/soft/R/library
R CMD INSTALL ncdf_1.6.tar.gz # fail
sudo R CMD INSTALL ncdf_1.6.tar.gz # fail
cd /home/user/soft/
# download
2006 Apr 25
0
need automake/autoconf help to build RnetCDF and ncdf packages
I imagine this "where are your header files" problem comes up in other
packages, so I'm asking this as a general R question. How should
configure scripts be re-written so they look in more places?
Briefly, the problem is that Fedora-Extras installs the header files
in a subdirectory /usr/include/netcdf-3 rather than /usr/include:
# rpm -ql netcdf-devel
/usr/include/netcdf-3
2008 Mar 13
0
need automake/autoconf help to build RnetCDF and ncdf packages
Greetings all,
I recently tried to install RNetCDF from within R (install.packages)
on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already
installed). This resulted in an error because the netcdf header files
are installed in /usr/include/netcdf-3 rather than /usr/include which
is where RNetCDF looks for them. This problem was described in a 2006
post (see below), but no
2003 Dec 11
1
bug + insufficient doc in R CMD INSTALL (PR#5703)
Hello,
I believe I have found a bug in the R INSTALL script
(src/scripts/INSTALL.in). The problem comes up when a user tries to
specify more than one "--config-args" (or, I imagine, "--config-vars") on
the R CMD INSTALL line. In such a case, no error message is generated, but
the first specification is silently overwritten by the second
specification. The process therefore
2010 Mar 09
1
ncdf installation
Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
**
2008 Dec 23
1
NetCDF within R: installation assistance
Greetings. I am attempting to add NetCDF libraries within R, and have
failed. We have R version 2.8, and are running on a 64-bit Redhat Linux
2.6.18 kernel:
Red Hat Enterprise Linux Client release 5.2 (Tikanga)
Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5
09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux
I have run the installation instructions found at
2009 Apr 21
1
joined R-today
Friends,
I am a newbie to R. Just installed and started with R. I installed netcdf
library (netcdf-4.0.tar.gz) and then ncdf package of R from CRAN with the
following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/usr/local/netcdf/include
-with-netcdf_libdir=/usr/local/netcdf/lib" ncdf_1.6.tar.gz
The installation was successful. But when i try to use ncdf inside R, i
2010 Oct 09
1
ncdf installation in R
Hi All,
I am trying to install ncdf package on a Linux 64-bit machine.
I successfully installed netcdf using this command,
./configure --prefix=/home/challar/netcdf/ --disable-netcdf4
I then tried to install ncdf package in R
R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz
I get this
2013 Mar 07
1
install error - Netcdf library (linux)
Hi All,
i'm on a debian linux 64bit,
i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4
but trying to build i received the error :
(i have necdf installed on my machine and it is able to fiund it .. no missed .h)
epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz
*
2011 Apr 03
1
installing ncdf on Ubuntu 10.04
Hello
I'm trying to install the "ncdf" package on a Ubuntu 10.04 laptop.
Can you offer suggestions to install this package?
> install.packages("ncdf", repositories = TRUE)
Installing package(s) into β/home/steve/R/i486-pc-linux-gnu-library/2.12β
(as βlibβ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
2010 Mar 24
1
install ncdf package
Dear R users
I am attempting to add lncdf_1.6.tar.gz libraries within R, and have
failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux
2.6.293.-60.fc10.x86_64.
I've run R CMD INSTALL ncdf_1.6.tar.gz
and I have the following
---------------
* Installing to library '/usr/lib64/R/library'
* Installing *source* package 'ncdf' ...
checking for gcc... gcc
2011 Sep 07
3
Editing the variables attributes section in the netCDF header of netCDF files created using the package ncdf.
Hi,
I am using the package ncdf to create netCDF files and I want to mimic the the header of an exiting netCDF file created outside of R. Below is what the existing header looks like (part of it that is different):
netcdf ccd1984_05_08 {
dimensions:
lat = 1974 ;
lon = 1894 ;
time = UNLIMITED ; // (1 currently)
variables:
int time(time) ;
2012 Jan 03
1
where to ask questions regarding package=ncdf?
Should one ask questions relating to the R package 'ncdf' here? or
look for a more netCDF-oriented (but probably less R-oriented) list?
Why I ask:
I'm relatively new to R, which I've only used in the past for graphics.
I'm trying to learn R as an alternative to manipulating netCDF files
with NCO (which works well but lacks all the other R goodnesses). Hence
I've got a
2003 Nov 20
2
netCDF, ncdf library
Dear all,
I would like to use data in .netcdf format and for those I have to use
the netCDF or ncdf packages.
Problem : these packages don't seem to work :
"Error in testRversion(descfields) : This package has not been
installed properly
See the Note in ?library" (with netCDF package)
Does anybody have the same problems with these packages ?
Is there any
2005 Apr 27
1
ncdf with opendap/dods support
Aloha,
I just made some quick hacks on the configure script with the 'ncdf'
package to make it link with the opendap/dods libraries (opendap.org)
rather than the netcdf api library. Basically, this allows a user to
interact in R with a remotely served dataset as if it were a netcdf file
on the local filesystem (read-only). Functionality with local files
should continue to work as
2012 Jan 05
1
[ncdf] programmatically copying a netCDF file
How to programmatically (i.e., without no or minimal handcoding) copy
a netCDF file? (Without calling
> system("cp whatever wherever")
:-) Why I ask:
I need to "do surgery" on a large netCDF file (technically an I/O API
file which uses netCDF). My group believes a data-assimilation error
caused a data variable to be corrupted in a certain way, so I'm going
to
2008 Jan 22
1
install ncdf package on a 64-bit machine
Dear All,
I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried
to install ncdf package but got the following error message when using
netcdflib:
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
-I/home/ljin/share/R-2.6.1/include
-I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o
gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include
2011 Sep 12
1
Problem in put.var.ncdf
Dear all,
I have a problem in writing a variable to a NetCDF-File.
My code works pretty well until the step put.var.ncdf():
# Get variables
#---------------------
data1 <- open.ncdf("PREC_me_03-1500.nc")
prec1 <- get.var.ncdf(data1,"PRECT")
dim.time <- get.var.ncdf(data1,"time2")
close.ncdf(data1)
# Calculation
#---------------------
spi24.me <-
2005 Jan 21
1
memory and swap space in ncdf
I've a linux system with 2Gb of memory which is not
enough for reading a 446Mb netcdf file using ncdf:
library(ncdf)
ncold <- open.ncdf("gridone.grd")
Error: cannot allocate vector of size 1822753 Kb
When I look at the free memory in my system I can see
that none of the Swap space is being used by R.
I am a newbie in linux and R, I've read the Memory
help pages but still
2009 Nov 10
3
NetCDF output in R
Dear CSAG R users,
I will be glad if someone can point out what I am doing wrong or not doing at all in this.
I am trying to write out netcdf file in R. I have 26 time step but only the first time step is written.
For example:
>library(ncdf)
>path <- '/home/work/'
>forecast <- open.ncdf(paste(path,'cam.1980.2005.nc',sep=""))
> fore <-