similar to: write.table file="file.txt" help

Hi all, Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

Re-sending this from 10/7. Please help! I'm really clueless how to fix this: System: Solaris 7, Software: R_1.7.1 for unix > R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz -works like a charm-- no syntax errors, etc But problems are when I'm loading the library within R. > library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library") > Error

Hello, Apologies in advance if this should be in R-devel, not Rhelp. I did read through the R-devel thread started by Gabor Grothendieck in September of this year - I am getting the exact same error using a new computer that has XP installed, not vista, complaining that the file hhc.exe is not found. I have downloaded the hhc.exe to HTML Help Workshop dir in Program Files but it says that

Hi, Anybody knows a function that can fit haplotype data to a Cox model. I've been searching it in the web without succeed. I use "haplo.stats" package, but unfortunatelly it's not possible to analyse survival data, amb I right?. Thanks in advance. Isaac Subirana (isubirana@imim.es) [[alternative HTML version deleted]]

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich

I upgraded from Fedora Core 4 to Fedora Core 5 and I find a lot of previously installed packages won't run because shared libraries or other system things have changed "out from under" the installed R libraries. I do not know for sure if the R version now from Fedora-Extras (2.2.1) is exactly the same one I was using in FC4. I see problems in many packages. Example, Hmisc: unable

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have

Dear all, I have a datafile where I run haplo.GLM analyses using several variables (a matrix). However, when I include a certain binary variable (0,1) I get this message Error: NA/NaN/Inf in foreign function call (arg 4) I don't get an error when I include another binary variable, again with only 0,1. Both variables don't have missing values, they only have 0 and 1. Why do I get an

"Recursive default argument reference" keeps appearing when I try to run a haplo.score function in R for Windows. I'm new to using this program. Does anyone know what this means? --------------------------------- [[alternative HTML version deleted]]

Hi, My query is regarding permutation test and reshuffling of genotype/phenotype data I have been using the haplo.stats package of R. for haplotype analysis and I would like to perform an analysis which I'm requesting your advice. I have a data set of individuals genotyped for 12 SNP and a dichotomous phenotype. At first, I have tested each of those SNP independently in order to bypass

i am using R, haplo.stats package. i am working in liux, redhat 5. I run this many times, but suddenly its showing 0xf42418, cause 'memory not mapped'. i run again again its showing the same problem. Can you help me to solve the problem. thank you in advance kalai

Hi, there, I cannot get accurate value for calculation. for example: ld<-sqrt(1*0.05*0.95*0.05*0.95) 0.05*0.95-ld=-6.938894e-18 0.05*0.95-ld==0 is False. I met this problem in my program, how can I handle it. Thanks. xj.

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Dear colleagues, I face a problem doing haplotype analyses with haplostats: when I use the haplo.em function, the programme gives an error message because of 'recursive default argument reference.' I am not able to figure out what this means. Could you perhaps help me? The full output is the following: > library(haplo.stats) >

Hi I have a small problem, I'm new in using R, so I hope you can help me... I'm running a logistic regression model and want to do a nice plot. The plot I have made is done a plot with the command jitter: plot(jitter(overto$age[overto$sex=="F"]),jitter(overto$neg.pos[overto$sex=="F"]),xlab="age",ylab="neg and pos") my responsvariable is positive

Hi, I have a matrix of say 1024x1024 and I want to look at it in chunks. That is I'd like to divide into a series of submatrices of order 2x2. | 1 2 3 4 5 6 7 8 ... | | 1 2 3 4 5 6 7 8 ... | | 1 2 3 4 5 6 7 8 ... | | 1 2 3 4 5 6 7 8 ... | ... So the first submatrix would be | 1 2 | | 1 2 | the second one would be | 3 4 | | 3 4 | and so on. That is I want the matrix to be evenly divided

I have a solution (actually a few) to this problem, but none are computationally efficient enough to be useful. I'm hoping someone can enlighten me to a better solution. I have data frame of chromosome/position pairs (along with other data for the location). For each pair I need to determine if it is with in a given data frame of ranges. I need to keep only the pairs that are within any of