similar to: Compiling R, cannot open vars.mk

> Date: Mon, 12 Apr 1999 11:30:20 +0200 (MET DST) > From: Albrecht Gebhardt <albrecht.gebhardt@uni-klu.ac.at> > > I think in R we can do better than at present, if only I knew > > exactly how. One idea is to have (effectively) a `hints' file that > > configure uses to add a base set of libraries to FLIBS, but on Solaris > > at least, using the Fortran

Hi, I just run a ./configure --enable-R-shlib; make; make check; with a recent (11.6.2001) R-devel snapshot on Tru64 4.0F (with libcxml): make check stops in base-Ex.R at: > ###--- >>> `plot.window' <<<----- Set up World Coordinates for Graphics Window> > ## alias help(plot.window) > > ##___ Examples ___: > > ##--- An example for the use

R developers, I am trying to understand how symbols are resolved, so that I can configure a package that I contributed to, and so that I can provide guidance to (linux / OSX) users of the package. To be concrete, my package uses the LAPACK Fortran symbol zsysv. This is not in libRlapack, but is defined on my system in the library /usr/lib64/liblapack.so. * I suspect that the reason the symbol is

Dear all, I have some problems to install R-2.4.1 on AIX 5.3. Configure string: ./configure --with-readline=no LDFLAGS='-bshared' --with-jpeglib=no --with-libpng=no --with-lapack=no --prefix=/cineca/prod/Bioinf/R-2.4.1 configure .site= #! /bin/sh CC=xlc F77=xlf MAIN_LDFLAGS=-Wl,-brtl SHLIB_LDFLAGS=-Wl,-G CXX=xlc CXXFLAGS=' -g -O' SHLIB_LDFLAGS=-W1, -G MAKE=gmake Configure ends

Full_Name: Laurent Gautier Version: 1.3.0-patched OS: IRIX 6.5 Submission from: (NULL) (130.225.67.199) During the configuration step, things do not go perfect: The file config.log has : configure:3754: gcc -o conftest -g -O2 -I/usr/freeware/include -I/usr/local/include -static conftest.c -L/usr/local/lib 1>&5 ld32: FATAL 9 : I/O error (/usr/lib32/mips3/nonshared/crt1.o): No such

Hi, I'm using valgrind to check over some C/C++ code for an R library. I'm getting the report (see below), but can't track down the uninitialised value(s). I tried using --track-origins=yes in valgrind which gives: ==28258== Uninitialised value was created by a stack allocation ==28258== at 0xEE33D98: ??? (in /usr/lib64/R/lib/libRlapack.so) I presume the problem is an

Hi All I just installed R 3.1 on fedora 20 after removing rstudio # rpm -q R R-3.1.0-5.fc20.x86_64 after I removed rstudio (I don't use it that much but need it for teaching) I tried to reinstall rstudio but its missing libRblas.so and libRlapack.so dependencies I'm guessed it would be OK to force it because lapack-devel and blas-devel are installed so I tried # rpm -ivh --no-deps

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : >

Full_Name: Dan Kelley Version: 1.9.0 OS: OSX (Darwin 7.3.0) Submission from: (NULL) (129.173.23.36) R-1.9.0 will not compile on Apple OSX (Darwin kernel 7.3.0). The error msg starts as follows, and has several more errors. gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.f ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib dlapa ck0.lo

I have been trying to compile the earth Multivariate Adaptive Regression of Splines package as a standalone application under Linux (x86_64 kernel-2.6.27.21 openSUSE 11.1) with gcc 4.3.2. The package compiles without problems from within R as an R module and I get the following linker error: earth.c:(.text+0x1a14): undefined reference to `dqrdc2_' earth.c:(.text+0x1ae4): undefined

Greetings, I last built R-2.11.1 a few months ago. The computer was equipped with these:- ---cpu amd64 2 cores ---o/s cblfs 64-bit only linux kernel-2.6.32 gcc-4.4.2 jdk(1.5)-6U20? ---bls atlas3.9.26 lapacck-3.2.1 I obtained an installed directory of ~58Mbytes and in the ~/lib directory was libR.so (~7.8Mbytes in size) as well as libRblas.so and libRlapack.so (~2.9Mbytes). I have

Agustin, posted on R-help. I think the problem is one of the debian/ubuntu package 'r-cran-robustbase' and its setup or (missing?) dependencies. I can confirm Agustin's problem, working on Ubuntu 8.04.2 (8.04 is a "LTS" = long time support version). apt-get install r-cran-robustbase works fine, but when trying to load the package, there's a DLL - dependency on

Whenever I try to load the Matrix package, I get the following error message: libRlapack.so: cannot open shared object file: No such file or directory A file with that name is indeed not on the hard disk. I am using the R version which comes with Ubuntu Hardy Heron LTS. Here is the output of R.Version(): R.Version() $platform [1] "i486-pc-linux-gnu" $arch [1] "i486" $os [1]

Hello, After upgrading to 2.7.2 this morning via the cran repository, I get the following error when calling R via the command line: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to

On 11/09/2019 21:38, Berend Hasselman wrote: > The Lapack library is loaded automatically by R itself when it needs it for doing some calculation. > You can force it to do that with a (dummy) solve for example. > Put this at start of your script: > > <code> > # dummy code to get LAPACK library loaded > X1 <- diag(2,2) > x1 <- rep(2,2) > # X1;x1 > z <-

Hi, I am trying to compile R-2.1.1 on MacOSX 10.3.9, but the make is failing (I am building it without all the aqua stuff): ./configure --enable-R-shlib --with-lapac make .... Snip ..... gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.framework/Versions/2.1.1/Resources/lib/libRlapack.dyli b -o libRlapack.dylib dlamc.lo dlapack0.lo dlapack1.lo dlapack2.lo

Hi everyone, I am having installation problems, but this is how it all started: I had some errors running the bioconductor package affyPLM that uses LAPACK/Blas > Pset <- fitPLM(Data) Background correcting PM Normalizing PM Fitting models /usr/local/lib/R/bin/exec/R: relocation error: /usr/local/lib/R/lib/libRlapack.so: undefined symbol: s_copy # thrown out of R .... I was using R

Greetings on A.N. Kolmogorov's 100th birthday: I am sure that this is a resolved problem, certainly it has been raised in R help several times before, but I can't seem to find the right clue. I've recently upgraded a G4 to OS 10.2.5 and I thought I would have another go at installing R from source, after failing to accomplish this in 10.1. So with 1.7.0 from CRAN configure seems to

Hi all, I am wondering if anyone has problem installing 'knncat' package. I tried to install using 'Rcmd INSTALL knncat_1.1.1.tar.gz', error message appeared. I attached the message in the end. I allso tried to install from RGui, but it was not listed. Thanks in advance. Regards, jenny ---------- Making package knncat ------------ adding build stamp to DESCRIPTION