similar to: floor of n observations in number generators

You asked the same question on the Bioconductor mailing list back in August. At that time, you suggested yourself a solution for how the adjusted p-values should be interpreted. I answered your query and told you that your interpretation was correct. So I'm not sure what more can be said, except that you should read the article Wright (1992), which is cited in the help entry for p.adjust(),

Dear colleagues, This is not strictly a R question, but I hope it is ok to ask on the list. I fed a vector of p-values from about 20 million anova tests to the package q-value and obtained this output: > qsummary(asso_p.qvalue) Call: qvalue(p = asso_p.vec) pi0: 1 Cumulative number of significant calls: <1e-04 <0.001 <0.01 <0.025 <0.05 <0.1 <1

I am using storey's qvalue package but I keep on getting errors. Why is this? > qvalue(p, lambda=0.5)$pi0 [1] "ERROR: p-values not in valid range." Error in qvalue(p, lambda = 0.5)$pi0 : $ operator is invalid for atomic vectors -- Thanks, Jim. [[alternative HTML version deleted]]

Hi all, I want to draw a histgram for each row of a matrix and compare them. However the plot I got does not have the same y range and x range, which makes it difficult to make the comparison. Is there a easy way to fix the x range and y range in a xy plot for several plots, instead of specifying them for each plot. The following is my code for generalizing the matrix and draw the histogram.

Good evening every body, I am a new one of this mail list. In my project I have faced a problem. That is when I copied my files from windows2000srv to redhat8 Linux or from redhat8 to windows2000srv by samba(the quantity of file is 26200 and the size is about 750MB) I found that about 10 files lost. The quantity of lost file is changed every time. Would you like to help me? Is this a problem of

I am running RedHat8, samba 2.2.7 The mailing list archives seem to pin the 2gb problem on several unrelated issues (all of which i explored). The machines in question have no problems creating 2+gb files locally and via NFS. Is this an issue with smbfs? smbmount? anyone have a workaround? -- 'As we enjoy great Advantages from the Inventions of others we should be glad of an Opportunity

Hi. I've done a standard barplotexample using R1-8.0, redhat8, probably using a GhostScript-integration. How can I improve the "sharpness" of the fonts. See for example the barplot (originally jpg coming from R) which is part of this screendump: http://www.zug.dk/Members/Nielssteenkrogh/1067525916309553166/element_103003161029 I'm not sure where to improve the this. Is it an

hello all, i'm really trying to mount a PDC with samba-2.2.8a and RedHat8. when i introduce the clients to domain all run Ok, but when i reboot the system and try to logon to the domain, the system send me a message like this "the system could not log you on because the domain 'DomainName' is not available" any body know what is the reason for? please help me... Note:

Hi folks Got Icecast2 running on Redhat8 with IceS2 as a source, streaming some OGG files. All works nicely (not _especially_ reliable :) but it seems to lock up the Freedomaudio java player between tracks. Everytime a new file begins, the player stops and says 'Loading'. I'm wondering if it's somehthing to do with metadata - is there a way of disabling metadata from IceS2? (i.e.

Hi, I have to move our old samba file server to a new machine. The old samba server was a RedHat8 with samba 2.2.5. The new one is SLES9 with samba 3.0.2b-3.4 SuSE Is there a way to re-use the old smbpasswd file? In the log-files I can see that the authentication fails when I try to access a shared folder. A windows client keeps on asking the login and password. Is it possible to re-use

Mark, there is a fdr website link via Yoav Benjamini's homepage which is: http://www.math.tau.ac.il/%7Eroee/index.htm On it you can download an S-Plus function (under the downloads link) which calculates the false discovery rate threshold alpha level using stepup, stepdown, dependence methods etc. Some changes are required to the plotting code when porting it to R. I removed the

Recently our sysadm accidentally powercycled our server (RedHat8) after 198 days of uptime, and upon boot it insisted on checking one partition (/dev/sda7) in our RAID. When it was done, the files were in the state of August 23 last year, with anything newer either gone or invisible. I guess something went wrong with journaling data. What can I do to restore the current state (except restore from

Hello Everyone, I am new to asterisk and linux too, I managed to installed asterisk on redhat8 with the help of mailing list archives and Handbook guide. I configured 2 SIP phones (grandstream) and it is working fine internally. We have T1 Line coming in with block of 200 DID Numbers. I want to assign DID Numbers to each of SIP phones as an extensions and able to call any PSTN line.

I recently installed Mandrake 10.1 on my laptop, downloaded the latest version of R, compiled it and ran it. To my surprise I discovered that the X11() command returned an error to the effect that X was not available. Examining R config.log I noticed that there were several complaints about X and tcl in there. Basic include files, such as X11/X.h were not found. I have previously compiled

Dear All, I have a working asterisk installation in the UK on BRI point-to-point. I am using Redhat8 with one Eicon Diva Server 2.0 card with chan_capi-0.3.5 and Asterisk 1.0.1. I have got to the stage where I can make and receive calls over ISDN. My question: How do I group the 2 B channels so that when one channel is in use, the other channel is availble to receive[make] an

Dear all, I need to do some calculation where the code used are below. I get error message when I choose k to be large, say greater than 25. The error message is "Error in integrate(temp, lower = 0, upper = 1, k, x, rho, m) : the integral is probably divergent". Can anyone give some help on resolving this. Thanks. Hannah m <- 100 alpha <- 0.05 rho <- 0.1 F0

Hi All, I''m using iptables-1.2.7a on RedHat8 kernel 2.4.20. I wanted to limit the file-sharing traffic to the internet. I marked the packets with iptables: iptables -A FORWARD -t mangle -p tcp -s 192.168.1.1/24 -d ! 192.168.1.1/24 --dport 1024:1862 -j MARK --set-mark 1 iptables -A FORWARD -t mangle -p tcp -s 192.168.1.1/24 -d ! 192.168.1.1/24 --dport 1864:65535 -j MARK --set-mark 1

Hi , I am new to R. I am trying to run a simple R script as shown below: aov.R ------ data1<-c(49,47,46,47,48,47,41,46,43,47,46,45,48,46,47,45,49,44,44,45,42,45,45,40 ,49,46,47,45,49,45,41,43,44,46,45,40,45,43,44,45,48,46,40,45,40,45,47,40) matrix(data1, ncol= 4, dimnames = list(paste("subj", 1:12), c("Shape1.Color1", "Shape2.Color1", "Shape1.Color2",

Hi, Interpretation problem ! so what i did is by using the: >fit1 <- fitdist(vectNorm,"beta") Warning messages: 1: In dbeta(x, shape1, shape2, log) : NaNs produced 2: In dbeta(x, shape1, shape2, log) : NaNs produced 3: In dbeta(x, shape1, shape2, log) : NaNs produced 4: In dbeta(x, shape1, shape2, log) : NaNs produced 5: In dbeta(x, shape1, shape2, log) : NaNs produced 6: In

Dear R users, first I take this opportunity to greet all the R community for your continuous efforts. I wrote a function to calculate the pdf and cdf of a custom distribution (mixed gamma model). The function is the following: pmixedgamma3 <- function(y, shape1, rate1, shape2, rate2, prev) { density.function<-function(x) { shape1=shape1 rate1=rate1 shape2=shape2