similar to: dyn.load error with C file

I am on Solaris 7, using R_1.7.1 developing packages for both Splus and R. We have a working R-package for haplo.score and now converting to haplo.stats. R CMD INSTALL -l /people/biostat3/sinnwell/Rdir/library haplo.stats_1.1.0.tar.gz works like a charm-- as comparable to our working version of haplo.score. But problems are when I'm loading the library within R. Within my package I have

We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system

Full_Name: Eric Lunde Version: 2.0.1 OS: Solaris 9 Submission from: (NULL) (129.176.151.21) Hi R Devel, I am assisting one of my fellow R users who is developing a package for both Splus and R. He has been using the Sd2Rd command to convert his sgml help files into Rd help files. We believe we have found a bug. We noticed that if an sgml help file has multiple <s-topic> tags, each of

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

haplo.stats, version 1.5.2, is now available on CRAN. Below I provide the description and link to our software page where you can also find the updated user manual. The most notable updates for this version were to make the haplo.glm fitted object work more like the glm object; other changes are listed in the NEWS file entries pasted below. DESCRIPTION: haplo.stats: Statistical Analysis of

Using R 1.8.1 on Solaris Developing an Splus and R package from the same files. Creating an alias for multiple functions to the same file in .sgml: <s-topics> <s-topic> my.function </s-topic> <s-topic> print.my.function </s-topic> </s-topics> using R CMD Sd2Rd would convert to: \name{my.function} \alias{my.function} \name{print.my.function}

Dear useRs- I am developing a package that uses output from stand-alone unix software programs. I use multiple perl scripts to process the output and make it ready for reading into R. I would like to keep the perl scripts in the designated place for such files, exec/, but I can't find how a user is supposed to be able to use those when using the library. R-exts 1.1.4:

Hi all, Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in

Hi there, I set up my company's back up server using rsync. And I've got a strange problem. I searched in the archives of this list, but none of them seems not giving me an idea to solve the problem. If anyone can help, it would be grateful. I'm using cron by a user (non wheel/admin) to rsync everyday during the night. The cron is set in the server to transfer the backing-up

Using R 1.7.1 in Solaris I'm developing a package for both Splus and R, and I'm trying to use all the same files for R and Splus, both function files and help files. I have two questions. 1) The file made by R CMD check to run .Rd-examples posts examples from files in alphabetical order. Is it okay/recommended/common-practice to set up all the example data in the first two

Hi all, I have a R script that creates several input files for an analysis program. It loops through the matrix read into R and picks out submatrices and then creates a separate output file for each submatrix. The loop works great, but I am having trouble getting all the separate output files written. The line I have is: write.table(ch1d,

Hi, Anybody knows a function that can fit haplotype data to a Cox model. I've been searching it in the web without succeed. I use "haplo.stats" package, but unfortunatelly it's not possible to analyse survival data, amb I right?. Thanks in advance. Isaac Subirana (isubirana@imim.es) [[alternative HTML version deleted]]

Hi guys, I am trying to compile a 64bit version of R 2.7.0 on AIX 5.3. And I am running into some troubles. I also try the latest version 2.7.1 and get the very similar errors. The machine info: ----------------------- $uname -srvp AIX 3 5 powerpc ---------------------- My configuration is this: ---------------------------------------------------------- ./configure \

Dear all As far as I could trace, looking at the function C function numeric_deriv, this unwanted behavior comes from the inner most loop in, at the very end of the function, for(i = 0, start = 0; i < LENGTH(theta); i++) { for(j = 0; j < LENGTH(VECTOR_ELT(pars, i)); j++, start += LENGTH(ans)) { SEXP ans_del; double origPar, xx, delta; origPar = REAL(VECTOR_ELT(pars, i))[j];

Sehr geehrte Damen und Herren, hiermit m?chte ich bei Ihnen nachfragen, ob die f?r Splus geschriebene "haplo.score"- Funktion auch unter R verwendet werden kann. siehe http://www.mayo.edu/statgen/software/ Wenn ja, wie sind die Aufrufe Splus CHAPTER -m und Splus make in R zu realisieren? Herzlichen Dank f?r Ihre M?he mit freundlichen Gr??en -- Dr. rer. nat. Andreas Fr?hlich

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

Dear useRs, Please find the new package ibdreg version 0.1.0 on CRAN. The package contains a method for analysis of genetic linkage with covariates by regression methods that use identity by descent (IBD) sharing probabilities for relative pairs. The methods account for correlations of IBD statistics for relative pairs within the same pedigree. The reference is: Schaid DJ, Sinnwell JP,

I upgraded from Fedora Core 4 to Fedora Core 5 and I find a lot of previously installed packages won't run because shared libraries or other system things have changed "out from under" the installed R libraries. I do not know for sure if the R version now from Fedora-Extras (2.2.1) is exactly the same one I was using in FC4. I see problems in many packages. Example, Hmisc: unable

I have written a bash script (see below) to generate bootable SD-USB images using syslinux as booter. The script works OK with versions 3.63 and 3.71, but I get a null pointer error executing /tmp/$SYSLINUX/linux/syslinux -sf -o 16384 SD.img in 3.72. If you execute $ sudo sh SDformat.sh sys then you can test the image easily with qemu $ qemu -hda SD.img ++++++ SDformat.sh

Dear all, I have a datafile where I run haplo.GLM analyses using several variables (a matrix). However, when I include a certain binary variable (0,1) I get this message Error: NA/NaN/Inf in foreign function call (arg 4) I don't get an error when I include another binary variable, again with only 0,1. Both variables don't have missing values, they only have 0 and 1. Why do I get an