Displaying 20 results from an estimated 500 matches similar to: "C dynamic library error on Solaris 7"
2003 Oct 09
1
dyn.load error with C file
Re-sending this from 10/7. Please help! I'm really clueless how to fix this:
System: Solaris 7, Software: R_1.7.1 for unix
> R CMD INSTALL -l /Rdir/library haplo.stats_1.1.0.tar.gz
-works like a charm-- no syntax errors, etc
But problems are when I'm loading the library within R.
> library(haplo.stats, lib.loc="/people/biostat3/sinnwell/Rdir/library")
> Error
2006 Aug 24
2
Problem in library.dynam problems on Linux
We have R 2.2.1 installed on a Linux cluster that seems to have problems loading either of our shared object libraries for packages. This seems to be happening on both local and global versions of packages that we install. However, we have only noticed this problem in the past 3 months on this R installation, whereas some users had success before then. It could be that something on our system
2005 Apr 14
0
Sd2Rd command (PR#7791)
Full_Name: Eric Lunde
Version: 2.0.1
OS: Solaris 9
Submission from: (NULL) (129.176.151.21)
Hi R Devel,
I am assisting one of my fellow R users who is developing a package for both
Splus and R. He has been using the Sd2Rd command to convert his sgml help files
into Rd help files. We believe we have found a bug. We noticed that if an sgml
help file has multiple <s-topic> tags, each of
2012 Jan 10
0
haplo.stats version 1.5.2
haplo.stats, version 1.5.2, is now available on CRAN.
Below I provide the description and link to our software page where you
can also find the updated user manual. The most notable updates for this
version were to make the haplo.glm fitted object work more like the glm
object; other changes are listed in the NEWS file entries pasted below.
DESCRIPTION:
haplo.stats: Statistical Analysis of
2012 Jan 10
0
haplo.stats version 1.5.2
haplo.stats, version 1.5.2, is now available on CRAN.
Below I provide the description and link to our software page where you
can also find the updated user manual. The most notable updates for this
version were to make the haplo.glm fitted object work more like the glm
object; other changes are listed in the NEWS file entries pasted below.
DESCRIPTION:
haplo.stats: Statistical Analysis of
2006 Dec 05
0
New package: ibdreg
Dear useRs,
Please find the new package ibdreg version 0.1.0 on CRAN.
The package contains a method for analysis of genetic linkage
with covariates by regression methods that use identity by descent
(IBD) sharing probabilities for relative pairs. The methods
account for correlations of IBD statistics for
relative pairs within the same pedigree.
The reference is:
Schaid DJ, Sinnwell JP,
2006 Dec 05
0
New package: ibdreg
Dear useRs,
Please find the new package ibdreg version 0.1.0 on CRAN.
The package contains a method for analysis of genetic linkage
with covariates by regression methods that use identity by descent
(IBD) sharing probabilities for relative pairs. The methods
account for correlations of IBD statistics for
relative pairs within the same pedigree.
The reference is:
Schaid DJ, Sinnwell JP,
2004 Mar 17
1
R CMD Sd2Rd
Using R 1.8.1 on Solaris
Developing an Splus and R package from the same files.
Creating an alias for multiple functions to the same file in .sgml:
<s-topics>
<s-topic> my.function </s-topic>
<s-topic> print.my.function </s-topic>
</s-topics>
using R CMD Sd2Rd would convert to:
\name{my.function}
\alias{my.function}
\name{print.my.function}
2004 Jul 29
1
perl script in exec/
Dear useRs-
I am developing a package that uses output from stand-alone unix software
programs. I use multiple perl scripts to process the output and make it ready
for reading into R. I would like to keep the perl scripts in the designated
place for such files, exec/, but I can't find how a user is supposed to be able
to use those when using the library.
R-exts 1.1.4:
2008 Dec 06
0
syslinux 3.72 fails where 3.71 didn't
I have written a bash script (see below) to generate bootable SD-USB
images using syslinux as booter. The script works OK with versions
3.63 and 3.71, but I get a null pointer error executing
/tmp/$SYSLINUX/linux/syslinux -sf -o 16384 SD.img
in 3.72.
If you execute
$ sudo sh SDformat.sh sys
then you can test the image easily with qemu
$ qemu -hda SD.img
++++++ SDformat.sh
2001 Oct 04
1
patch - forceshell
Attached is a simple patch which allows an auth param 'shell=' like
'command='
When specified, sshd will use this shell instead of the one in
/etc/passwd or the default shell.
This patch allows you can have some chrooted shell (actually any shell)
associated with a specific key.
You could do this with command=, but then the command given to ssh will
be ignored, and scp will not
2004 Oct 19
2
pasting indexes to variables within loops
Hi all,
Hope someone can help me. I start out with a matrix called haplo with 600 rows and two columns. To start with, the elements of the matrix are character strings of 20 numbers. I then want to create separate objects, called ha1-ha600, that are the concatenated 20 + 20 numbers, as numeric. I am having no trouble doing anything except getting the index i to paste to the object ha(i) in
2006 Oct 10
0
Haplo.Stats: error (recursive default argument reference)
Dear colleagues,
I face a problem doing haplotype analyses with haplostats: when I use
the haplo.em function, the programme gives an error message because of
'recursive default argument reference.' I am not able to figure out what
this means. Could you perhaps help me?
The full output is the following:
> library(haplo.stats)
>
2005 Jul 23
2
link_stat
Hi there,
I set up my company's back up server using rsync.
And I've got a strange problem. I searched in the archives of this
list, but
none of them seems not giving me an idea to solve the problem.
If anyone can help, it would be grateful.
I'm using cron by a user (non wheel/admin) to rsync everyday during
the night.
The cron is set in the server to transfer the backing-up
2004 Jan 26
3
write.table file="file.txt" help
Hi all,
I have a R script that creates several input files for an analysis
program. It loops through the matrix read into R and picks out
submatrices and then creates a separate output file for each
submatrix. The loop works great, but I am having trouble getting all
the separate output files written.
The line I have is:
write.table(ch1d,
1998 Jan 21
2
alloc
I am trying to get our database interface (PADI) working with R. The code does
some memory allocation and for Splus there is an ifdef which controls whether
malloc or S_alloc is called. I did nm R.binary | grep alloc to see if this was
supported and I find there are some choices:
[2490] | 446036| 272|FUNC |GLOB |0 |7 |R_alloc
[806] | 693956| 312|FUNC |LOCL |0 |7
2002 Jun 13
3
[R] help debugging segfaults
Hi all,
Thanks to Prof. Ripley, Prof. Gentleman, and Simon Wood (did I miss
anyone?). The problem seemed to have gone away.
Everyone suggested using some malloc debugger (such as Electric Fence). All
I did was following half of what BDR suggested below, i.e., changing all the
S_alloc() calls to Calloc() and Free(). I didn't get to try efence, and the
problem seems to have disappeared!
As
2008 Sep 28
0
constrained logistic regression: Error in optim() with method = "L-BFGS-B"
Dear R Users/Experts,
I am using a function called logitreg() originally described in MASS (the
book 4th Ed.) by Venebles & Ripley, p445. I used the code as provided but
made couple of changes to run a 'constrained' logistic regression, I set the
method = "L-BFGS-B", set lower/upper values for the variables.
Here is the function,
logitregVR <- function(x, y, wt =
1997 Jul 28
0
R-alpha: R 0.50.a1 S_alloc BUG, priority = URGENT
The current version of S_alloc in src/main/memory.c is
char *S_alloc(long nelem, int eltsize)
{
unsigned int i, size;
char *p = R_alloc(nelem, eltsize);
for(i=0 ; i<size; i++)
p[i] = 0;
return p;
}
which segfaults because `size' is not initialized. I am not what the
right fix is, adding
size = nelem * eltsize;
before the loop seems to work.
As an aside ... I think the seed*
2001 Apr 15
0
newbie to R but not to stats programming
Dear R-list
I am a newbie to R, but I have been doing statistical
programming for 15 years, in SAS, Stata, Perl, and
various idioms of SQL. A number of basic working
issues have so far eluded me in R, so I thought I
would post several long and newbie messages in the
hope that several people will respond with different
ways to resolve these issues.
I have read Maindonald's _ Intro_, and