similar to: R installation

Hi The cor function in the stats package calculates the correlation between columns of data, does anyone know if it is at all possible to calculate the correlation between rows instead ? Or is there an appropriate package or function that is more appropriate I'd like to calculate spearman & pearson correlations between rows. Many thanks Jason -- --------------------------------

Hi All Not sure if this a bioconductor question or general R mailing list so apologies if this has gone to the wrong one................. When plotting dendrograms created by hclust you can "identify" clusters by clicking on the graphics and returning a list of what is contained in each cluster. However I'd like to be able to "zoom in" on specific clusters and plot

HI All sorry if this question has already been asked but I couldn't find anything that answered my question I have 24 columns of data that I'm trying to plot in heatmap.2 (gregmisc) and I'm having difficulty ordering them except in numerical sequence: I have transposed my matrix so it will appear with the dendrogram I want appearing at the top of the heatmap If I use either of

Hi I know this subject has been mentioned before but from the mail archives I'm under the impression that this is not possible ? I'm trying to carryout the equivalent of ls -l in R to give some date/time label to each of my objects If the case is that there is no equivalent, is it possible to list all objects in an environment that share a common component ? So that the common

Thanks to Saeed Abu Nimeh. I used pkg_add to install R package on 4.4BSD. My directory now has the following: BUILDDIR Makefrag.cc_lo config.log m4 tests Makeconf Makefrag.cxx config.status po tools Makefile R-2.6.1 doc roots Makefile.bak R-2.6.1.tar.gz etc share Makefrag.cc SVN-REVISION libtool

Hi, I would like some extra information on the 'cgh' package in R. I noticed that there isn't much activity regarding this package on the R and BioC mailing list (I googled it). I started using this package and I have few questions: 1/ As I have a custom tiling like array @8um features resolution (affy), I have a lot of probes to work with. I'm assuming it is correct to

I am relatively new to R and am looking for advice, ideas or both... I have a data set that consists of pathogen population sizes on individual plant units in an experimental field plot. However, in order to estimate the pathogen population sizes I had to destroy the plant unit and could not determine if that plant unit became diseased or to what extent it would have become diseased. I

Sometimes I find it useful to put C or Fortran sources under subdirs of "mypackage/src", especially to distinguish between my own files and e.g. lapack or blas sources. To get this working I would need a Makefile in my package which contains the appropriate dependencies to these sources in subdirs. But I don't want to add a complete Makefile, I want only a Makevars file containing

Hi, I have been having problems installing the newest version on Linux (Ubuntu 9.10) (tried on two machines). The ./configure appears to work but I get the following error on the 'make' command. $ make make: *** No targets specified and no makefile found. Stop. Below I'll post the contents of the configured folder. Any ideas what is causing the problem? Thanks, Rhett. rhett at

Hello Please find bug report attached. Thanks Matthew -- Matthew Gillman Team 105: Variation Informatics Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK Tel: 01223 834244 Ext. 4922 -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered

Dear R-help, I am trying to build R-1.5.1 on a Sun Blade 100 (sparc). It fails make check when var(1) returns NaN instead of NA. Using gcc-2.95.3 from sunfreeware.com, the build succeeds and passes make check I have: Solaris 8 gcc-3.1 (built on that machine from sources and installed in /usr/local/gcc-3.1 with binaries symlink'ed to /usr/local/bin) A synopsis is at the bottom of

Dear R-help, I am trying to build R-1.5.1 on a Sun Blade 100 (sparc). It fails make check when var(1) returns NaN instead of NA. Using gcc-2.95.3 from sunfreeware.com, the build succeeds and passes make check I have: Solaris 8 gcc-3.1 (built on that machine from sources and installed in /usr/local/gcc-3.1 with binaries symlink'ed to /usr/local/bin) A synopsis is at the bottom of

Hi, First my apologies for a non-working piece of code in a previous submission, I have corrected this error. I'm doing is individual based modelling of a pathogen and it's host. The way I've thought of doing this is with two dataframes, one of the pathogen and it's genes and effector genes, and one of the host and it's resistance genes. During the simulation, these things

Hi, I am trying to install R 2.9.0 on AIX 5.3. During the 'make' run I get the following error: Error: Invalid DESCRIPTION file Invalid Priority field. Packages with priorities 'base' or 'recommended' or 'defunct-base' must already be known to R. See the information on DESCRIPTION files in section 'Creating R packages' of the

Dear all, I would like to know if it is possible to fit in R a Cox ph model with time-dependent covariates and to account for hierarchical effects at the same time. Additionally, I'd like also to know if it would be possible to perform any feature selection on this model fit. I have a data set that is composed by multiple marker measurements (and hundreds of covariates) at different time

Dear R users & Experts, This is just a curiousity, I was wondering why the dominant eigenvetor and eigenvalue of the following matrix is given as the third. I guess this could complicate automatic selection procedures. 0 0 0 0 0 5 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 Please

Hi everyone, I'm very new to all this, so please forgive me if I have the terminology mixed-up. We are preparing to install an Asterisk IP PBX over the weekend and I have an issue with the Polycom SP 500 phones we are trying to use. My problem is regarding DHCP. Our DHCP server is our Cisco PIX 501 firewall. I've specified option 66 and the phones connect to the FTP server

I can't make R on a Solaris 9 box. Does anyone have any suggestions? Thanks in advance. <3>-> make `Makedeps' is up to date. `libbz2.a' is up to date. `Makedeps' is up to date. `libpcre.a' is up to date. `Makedeps' is up to date. `libz.a' is up to date. ../../../src/include/libintl.h is unchanged ../../../include/libintl.h is unchanged `localecharset.h'

I am trying to compile R 2.2.1 on aix 5.3 with xlc/xlC 7.0 , but i am getting the error below. I did a search on the archive and someone had a similar error as me but I can't seem to find a fix for the error below. Target "R" is up to date. Target "R" is up to date. Target "R" is up to date. Target "R" is up to date. Target "Makedeps" is up

Found the solution to my 2.0.6 dying on me on SGI - SYSV_IPC needed to be #undef'ed in source/include/includes.h in favor of MMAP, seems to have fixed it. If I run the daemon in server mode, no prob. If I switch to domain mode (and use smbpasswd to join into the domain, per the instructions), I get the error indicating that the username/password pair was incorrect, as if I typed in a wrong