similar to: Missing 'getGroupMembers()'

Hi, I found the following on Windows 2000/NT R Version 1.9.1 (2004-06-21) (also Version 1.9.0): The S4 group "Math" doesn't work as documented; i.e., "log", "log10", "gamma" and "lgamma" are included in the documentation but don't work. See example code below. Moreover, what about 'genericForPrimitive' which is used in

Doing it like this: genericForPrimitive <- function(f, where = topenv(parent.frame()), mustFind = TRUE) { ans = .BasicFunsList[[f]] ## this element may not exist (yet, during loading), dom't test null if(mustFind && identical(ans, FALSE)) stop(gettextf("methods may not be defined for primitive function %s in this version of R",

Hi all, The function call series genericForPrimitive -> .findBasicFuns -> .findAll happens 4400 times while the GenomicRanges package is loading. Each time .findAll follows a chain of environments to determine that the methods namespace is the only one that holds a variable called .BasicFunsList. This accounts for ~10% of package loading time. I'm sure there is some history to that

Hi John, Here is my code practicing. Please give me some advises. Thank you. Wu Gong # Extract the function string f.str <- sub("y~","",exprtext) # Get arglist from the text sp1 <- paste("\\",c(getGroupMembers(Arith),"(",")"),sep="") sp2 <- getGroupMembers(Math) sps <-

Hi all, I've noticed a couple of small bugs/documentation errors related to S3 internal and group generics: * In ?S3groupGeneric, log2 and log10 are not listed as group generics, even though they are in the equivalent S4 groups, and are the source code for do_log1arg contains DispatchGroup("Math", ...) * As well as log2 and log10, tools:::.get_internal_S3_generics() fails to

Samba Admins: This is my second post on this matter so my apologies for redundant requests for help. My first request yielded only one response which did not solve my current problem. Background: We have been using Samba on Linux (Redhat) for several years to access shares on Sun servers. The Sun environment uses NIS/NFS for user accounts and sharing (mounting) remote file systems. Accessing

On 10/11/2006 2:48 PM, Seth Falcon wrote: > Hi, > > Reading help("Documentation"), I'm led to believe that a help call > like: > > ?myFun(x, sqrt(wt)) > > Will search for help on the appropriate method in the case that myFun > is generic. This isn't working for me. Here is an example using the > Biobase package: > > ## If Biobase is

Samba List: Any idea why a directory containing 376 sub-directories would only show 162 sub-directories via Windows Explorer? The machine is a Sun Ultra 1 running SunOS 5.5.1 and Samba 2.0.6. Leo Crombach Tropel Corporation Network Administrator 60 O'Connor Road 716-377-3200 Rochester, New York lcrombach@tropel.com 14450 www.tropel.com

Hi, There seems to be a problem with setGroupGeneric() from package 'methods'. The symptoms are somewhat erratic, in the sense that small changes may lead to any of the following behaviours. 1.Package works without problems on Windows and installs on Linux but gives error when loaded with library(). 2.Package installs on both systems and gives error when loaded on any of them. 3.

Hello, ?as.character says that the as.character function is a generic with usage: as.character(x, ...). So, I want to create an S4 object with an as.character method following the above usage, but I get the below error telling me that ... isn't in the generic for as.character. > setClass("tmp", "numeric") > setMethod("as.character", "tmp",

Hello, ?as.character says that the as.character function is a generic with usage: as.character(x, ...). So, I want to create an S4 object with an as.character method following the above usage, but I get the below error telling me that ... isn't in the generic for as.character. > setClass("tmp", "numeric") > setMethod("as.character", "tmp",

Hi all! I am working on a nested lme model with one fixed effect ("treatment", which 3 levels) and two random effects for "Individuals" (four of them) within "treatment" and "replicate -2 levels-" within "individual" within "treatment". For doing so, I´ve been trying to create a factor for Individual%in%Treatment, say IT by

Hi, I've noticed an issue with S4 methods and namespaces which only arises in particular, difficult to reproduce configurations. One example is the ggbio package in Bioconductor, which currently emits these warnings when its namespace is loaded: ---------------------- library(ggbio) Loading required package: ggplot2 Attaching package: ‘ggbio’ The following object(s) are masked from

Submitted for perusal, comment, improvements, and/or critique. The presentation is in 3 sections: motivation, code, and comment. Motivation: As a new-comer to R from matrix oriented Gauss and Mata, I miss the tools for using a vector (and operator) to ‘sweep’ across a matrix. Here is how these work. If M is I rows by J columns, then one entry corresponding to

First of all hello to everybody on this list. Question 1: I?m having a little (?) problem with winbind. To be short here is the situation: Runnign w2k AD on native mode. Linux box is Red Hat 7.2 with 2.4 kernel. Authentication from my W2K Active Directory server fails. I get following outputs with commands--> wbinfo -t --> secret is bad 0x000001 wbinfo -u --> Error looking up domain

Hi! I'm investigating the seccomp filter in openssh and I wanted to know whether the following system calls should be added to the filter: 1. getgroups - do_authentication2->dispatch_run_fatal->sshpkt_fatal->logdie->cleanup_exit->do_cleanup->temporarily_use_uid->getgroups 2. setgroups -

Hi, I have a data set on germination and plant growth with the following variables: dataset=fm mass (response) sub (fixed effect) moist (fixed effect) pop (fixed effect) mum (random effect nested within population) iheight (covariate) plot (random effect- whole plot factor for split-plot design). I want to see if moist or sub interacts with mum for any of the pops, but I am getting an error

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I have an odd problem and I was wondering if anyone has ever run into this before. I have a machine running solaris 8, OpenSSH 3.1p1 and OpenSSL 0.9.6c and it has been working fine for quite some time (ssh that is). Today, /etc/system was updated to increase the maximum number of groups from 16 to 32. After the system was rebooted, things seemed to be working as expected, however one of our

Full_Name: Simon Frost Version: 1.0.0 OS: Windows Submission from: (NULL) (129.215.60.79) Hi everyone, I've just installed R for Windows - I've previously been using it on Linux - and I've run into a problem when using lme. The lme routine throws up an error in the getGroups.data.frame command, complaining about an error in the formula: Error in getGroups.data.frame(dataMix,